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AT4G32940.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
vacuole 1.000
ASURE: vacuole
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : gamma vacuolar processing enzyme
Curator
Summary (TAIR10)
Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions. They are essential in processing seed storage proteins and for mediating the susceptible response of toxin-induced cell death.
Computational
Description (TAIR10)
gamma vacuolar processing enzyme (GAMMA-VPE); CONTAINS InterPro DOMAIN/s: Peptidase C13, legumain (InterPro:IPR001096); BEST Arabidopsis thaliana protein match is: alpha-vacuolar processing enzyme (TAIR:AT2G25940.1); Has 789 Blast hits to 787 proteins in 239 species: Archae - 4; Bacteria - 12; Metazoa - 277; Fungi - 115; Plants - 257; Viruses - 0; Other Eukaryotes - 124 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G32940-MONOMERBioGrid:14716EC:3.4.22.34eggNOG:COG5206eggNOG:KOG1348EMBL:AF370160EMBL:AF424619
EMBL:AL031804EMBL:AL161582EMBL:AY059104EMBL:AY133531EMBL:CP002687EMBL:D61395EnsemblPlants:AT4G32940
EnsemblPlants:AT4G32940.1entrez:829431GeneID:829431Genevisible:Q39119GO:GO:0000323GO:GO:0000326GO:GO:0004175
GO:GO:0004197GO:GO:0006624GO:GO:0009611GO:GO:0009723GO:GO:0009751GO:GO:0009753GO:GO:0010150
GO:GO:0051603Gramene:AT4G32940.1hmmpanther:PTHR12000hmmpanther:PTHR12000:SF13HOGENOM:HOG000236335InParanoid:Q39119InterPro:IPR001096
KEGG:ath:AT4G32940KO:K01369MEROPS:C13.006OMA:PANDNYTPANTHER:PTHR12000PaxDb:Q39119Pfam:PF01650
Pfam:Q39119PhylomeDB:Q39119PIR:T05302PIRSF:PIRSF019663PRIDE:Q39119PRINTS:PR00776PRO:PR:Q39119
ProteinModelPortal:Q39119Proteomes:UP000006548RefSeq:NP_195020.1SMR:Q39119STRING:3702.AT4G32940.1TAIR:AT4G32940tair10-symbols:GAMMA-VPE
tair10-symbols:GAMMAVPETMHMM:TMhelixUniGene:At.21567UniGene:At.48929UniGene:At.75634UniProt:Q39119
Coordinates (TAIR10) chr4:-:15900557..15903161
Molecular Weight (calculated) 54338.90 Da
IEP (calculated) 5.73
GRAVY (calculated) -0.37
Length 494 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTMTRVSV GVVLFVLLVS LVAVSAARSG PDDVIKLPSQ ASRFFRPAEN DDDSNSGTRW AVLVAGSSGY WNYRHQADIC HAYQLLRKGG LKEENIVVFM
101: YDDIANNYEN PRPGTIINSP HGKDVYQGVP KDYTGDDVNV DNLFAVILGD KTAVKGGSGK VVDSGPNDHI FIFYSDHGGP GVLGMPTSPY LYANDLNDVL
201: KKKHALGTYK SLVFYLEACE SGSIFEGLLP EGLNIYATTA SNAEESSWGT YCPGEEPSPP PEYETCLGDL YSVAWMEDSG MHNLQTETLH QQYELVKRRT
301: APVGYSYGSH VMQYGDVGIS KDNLDLYMGT NPANDNFTFA DANSLKPPSR VTNQRDADLV HFWEKYRKAP EGSARKTEAQ KQVLEAMSHR LHIDNSVILV
401: GKILFGISRG PEVLNKVRSA GQPLVDDWNC LKNQVRAFER HCGSLSQYGI KHMRSFANIC NAGIQMEQME EAASQACTTL PTGPWSSLNR GFSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)