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AT4G32910.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26775605 (2016): nucleus nuclear envelope
  • PMID:21189294 (2010): nucleus nuclear envelope
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21433285 (2011): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14712eggNOG:ENOG410YK7TeggNOG:KOG2271EMBL:AF361625EMBL:AL031804EMBL:AL161582EMBL:AY081256
EMBL:BT002244EMBL:CP002687EnsemblPlants:AT4G32910EnsemblPlants:AT4G32910.1entrez:829427GeneID:829427Genevisible:Q8RXH2
GO:GO:0005635GO:GO:0005643GO:GO:0015031GO:GO:0051028Gramene:AT4G32910.1hmmpanther:PTHR13373hmmpanther:PTHR13373:SF21
HOGENOM:HOG000005812InParanoid:Q8RXH2InterPro:IPR011502iPTMnet:Q8RXH2KEGG:ath:AT4G32910KO:K14304OMA:SHALTWQ
PaxDb:Q8RXH2Pfam:PF07575Pfam:Q8RXH2PhylomeDB:Q8RXH2PRIDE:Q8RXH2PRO:PR:Q8RXH2ProteinModelPortal:Q8RXH2
Proteomes:UP000006548RefSeq:NP_567908.1STRING:3702.AT4G32910.1TAIR:AT4G32910UniGene:At.28705UniProt:Q8RXH2
Coordinates (TAIR10) chr4:+:15881364..15885210
Molecular Weight (calculated) 80853.70 Da
IEP (calculated) 6.55
GRAVY (calculated) -0.19
Length 716 amino acids
Sequence (TAIR10)
(BLAST)
001: MPGMSSESGG GELVLFSTKE KTPVLYPLSY GLKSPVHRLS ISWGCGNNLR VTVLRNPELR DDDDGEVGGK VVNVRLSGED GEISDPQWRR IAYGSVSPFA
101: LLQSRRNSIS SLSKMDMSSS LYQTAWWEYV MEYSRDIKSL LSNTISLPAP LIEDPRSVIK NAEEPTSLKA AWELMELFYA DKTCLSWLPE RLVDWLSEYD
201: ILLSSSHPTI YSKLQDFQKE LVGLQAIEDD PRYWEVMASA LSVGWLEIVV KLLHLHGSYQ LDQLGHRETE NGLVEAVAVL ISKMPRMRPQ LEDGKFGECS
301: AAKPDFMKTR ERWQSQITKL ECSAFWVQCA HHQTREGLRN MLKIMIGNAD CLRAATCNWM ELFVSHLLYL RPFTKGLDGM HSLAQKCVQS KPVNTSHKLL
401: RLLIGILGEN TEVVLAECSK EFGSWMVAHA MELLTAGSEE GEVLVHEEQR KLGGINMEEL HRLVYAQVLS SHALTWQIAP IYLASCEKQG LGLLELLFYR
501: QPVQENQMLI KSLEICRLYE LSNVSAKLMK ISGVHHWKHG RKGSGIFWLQ QARDENCLSV IAQQLFDSVG KSLSDESLKQ WEGLVELLGS ESQISGGLDF
601: LHKYRDFKRS LKVVHDGKTI DAAHEAVERL VSLMKSPSTP QRFWLPLLHD SLKLLNWPER SLLNVTQTNL MLNKLQELSI ARLRPGFIES ELSAQAVGSV
701: RLALATNLGR AFLEEC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)