AT4G32910.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:nucleus 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
CONTAINS InterPro DOMAIN/s: Nuclear pore complex protein, Nucleoporin Nup85-like (InterPro:IPR011502); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15881364..15885210 | ||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 80853.70 Da | ||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.55 | ||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.19 | ||||||||||||||||||||||||||||||||||||||||||||
| Length | 716 amino acids | ||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MPGMSSESGG GELVLFSTKE KTPVLYPLSY GLKSPVHRLS ISWGCGNNLR VTVLRNPELR DDDDGEVGGK VVNVRLSGED GEISDPQWRR IAYGSVSPFA 101: LLQSRRNSIS SLSKMDMSSS LYQTAWWEYV MEYSRDIKSL LSNTISLPAP LIEDPRSVIK NAEEPTSLKA AWELMELFYA DKTCLSWLPE RLVDWLSEYD 201: ILLSSSHPTI YSKLQDFQKE LVGLQAIEDD PRYWEVMASA LSVGWLEIVV KLLHLHGSYQ LDQLGHRETE NGLVEAVAVL ISKMPRMRPQ LEDGKFGECS 301: AAKPDFMKTR ERWQSQITKL ECSAFWVQCA HHQTREGLRN MLKIMIGNAD CLRAATCNWM ELFVSHLLYL RPFTKGLDGM HSLAQKCVQS KPVNTSHKLL 401: RLLIGILGEN TEVVLAECSK EFGSWMVAHA MELLTAGSEE GEVLVHEEQR KLGGINMEEL HRLVYAQVLS SHALTWQIAP IYLASCEKQG LGLLELLFYR 501: QPVQENQMLI KSLEICRLYE LSNVSAKLMK ISGVHHWKHG RKGSGIFWLQ QARDENCLSV IAQQLFDSVG KSLSDESLKQ WEGLVELLGS ESQISGGLDF 601: LHKYRDFKRS LKVVHDGKTI DAAHEAVERL VSLMKSPSTP QRFWLPLLHD SLKLLNWPER SLLNVTQTNL MLNKLQELSI ARLRPGFIES ELSAQAVGSV 701: RLALATNLGR AFLEEC |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)