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AT4G32850.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : nuclear poly(a) polymerase
Curator
Summary (TAIR10)
Encodes a nuclear poly(A) polymerase. Located in the nucleus.
Computational
Description (TAIR10)
nuclear poly(a) polymerase (nPAP); CONTAINS InterPro DOMAIN/s: Poly(A) polymerase (InterPro:IPR014492), Poly(A) polymerase, central domain (InterPro:IPR007012), Nucleotidyltransferase, class I, C-terminal-like (InterPro:IPR011068), Nucleotidyl transferase domain (InterPro:IPR002934), Poly(A) polymerase, RNA-binding domain (InterPro:IPR007010); Has 808 Blast hits to 801 proteins in 219 species: Archae - 0; Bacteria - 13; Metazoa - 260; Fungi - 212; Plants - 185; Viruses - 0; Other Eukaryotes - 138 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:GQT-1241-MONOMERBioCyc:ARA:GQT-1729-MONOMERBioCyc:ARA:GQT-1731-MONOMERBioGrid:14706BRENDA:2.7.7.19EC:2.7.7.19eggNOG:COG5186
eggNOG:KOG2245EMBL:AK230297EMBL:AK316738EMBL:AK318704EMBL:AL161582EMBL:AY069880EMBL:AY323908
EMBL:BT000485EMBL:CP002687EnsemblPlants:AT4G32850EnsemblPlants:AT4G32850.1EnsemblPlants:AT4G32850.10EnsemblPlants:AT4G32850.2EnsemblPlants:AT4G32850.3
EnsemblPlants:AT4G32850.4EnsemblPlants:AT4G32850.5EnsemblPlants:AT4G32850.6EnsemblPlants:AT4G32850.7EnsemblPlants:AT4G32850.8EnsemblPlants:AT4G32850.9entrez:829421
ExpressionAtlas:Q8VYW1Gene3D:3.30.70.590GeneID:829421Genevisible:Q8VYW1GO:GO:0003723GO:GO:0004652GO:GO:0005524
GO:GO:0005634GO:GO:0006397GO:GO:0031123GO:GO:0043631GO:GO:0046872hmmpanther:PTHR10682hmmpanther:PTHR10682:SF22
HOGENOM:HOG000204376IntAct:Q8VYW1InterPro:IPR002934InterPro:IPR007010InterPro:IPR007012InterPro:IPR011068InterPro:IPR014492
iPTMnet:Q8VYW1KEGG:ath:AT4G32850KO:K14376OMA:QFGNNILPANTHER:PTHR10682PaxDb:Q8VYW1Pfam:PF01909
Pfam:PF04926Pfam:PF04928Pfam:Q8VYW1PhylomeDB:Q8VYW1PIR:T10692PIRSF:PIRSF018425PRIDE:Q8VYW1
PRO:PR:Q8VYW1ProteinModelPortal:Q8VYW1Proteomes:UP000006548RefSeq:NP_001031778.1RefSeq:NP_001031779.1RefSeq:NP_001119102.1RefSeq:NP_001119103.1
RefSeq:NP_195011.4RefSeq:NP_849561.1RefSeq:NP_849562.2RefSeq:NP_974668.1RefSeq:NP_974669.1RefSeq:NP_974670.2SMR:Q8VYW1
STRING:3702.AT4G32850.8SUPFAM:SSF55003SUPFAM:SSF81301SUPFAM:SSF81631TAIR:AT4G32850tair10-symbols:nPAPtair10-symbols:PAP(IV)
UniGene:At.25084UniProt:Q8VYW1
Coordinates (TAIR10) chr4:+:15850134..15854375
Molecular Weight (calculated) 83947.70 Da
IEP (calculated) 5.16
GRAVY (calculated) -0.44
Length 741 amino acids
Sequence (TAIR10)
(BLAST)
001: MMVGTQNLGG SLPPLNSPKS YGITKPLSLA GPSSADIKRN VELEKYLVDE GLYESKDDTM RREEVLGRID QIVKHWVKQL TQQRGYTDQM VEDANAVIFT
101: FGSYRLGVHG PGADIDTLCV GPSYVNREED FFIILHDILA EMEEVTELHP VPDAHVPVMK FKFQGIPIDL LYASISLLVV PQDLDISSSS VLCEVDEPTV
201: RSLNGCRVAD QILKLVPNFE HFRTTLRCLK YWAKKRGVYS NVTGFLGGVN WALLVARVCQ LYPNAIPSML VSRFFRVYTQ WRWPNPVMLC AIEEDELGFP
301: VWDRRKNHRD RYHLMPIITP AYPCMNSSYN VSQSTLRVMT EQFQFGNNIL QEIELNKQHW SSLFEQYMFF EAYKNYLQVD IVAADAEDLL AWKGWVESRF
401: RQLTLKIERD TNGMLMCHPQ PNEYVDTARQ FLHCAFFMGL QRAEGVGGQE CQQFDIRGTV DEFRQEVNMY MFWKPGMDVF VSHVRRRQLP PFVFPNGYRR
501: PRQSRHQNLP GGKSGEDGSV SHSGSVVERH AKRKNDSEMM DVRPEKPEKR ASLSPQSLDI VSPENSAITT GWTPPVCNLR RPPSEEIEAD NLNTECTELT
601: DLARNECNSG SEQVLEVDSM AVVQECSDPA EPLGKCVTPD SVDVVACVSG QEENLDRNLR SVSISGTDSP LLPSRSCGQN RDYEGFGFPA ANSDPMGKKN
701: LYSQSGMSED LQSNSLVSGM EKSEDRARSE SFQKSQIRLL T
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)