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AT4G32770.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:24872594 (2014): plastid plastid envelope
  • PMID:24361574 (2014): plastid plastid stroma
  • PMID:23851315 (2013): plastid
  • PMID:23390424 (2013): plastid plastid envelope
  • PMID:22274653 (2012): plastid plastid stroma plastoglobules
  • PMID:21531424 (2011): plastid
  • PMID:20061580 (2010): plastid plastid envelope
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:16461379 (2006): plastid plastid stroma plastoglobules
  • PMID:16414959 (2006): plastid plastid stroma plastoglobules
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : tocopherol cyclase, chloroplast / vitamin E deficient 1 (VTE1) / sucrose export defective 1 (SXD1)
Curator
Summary (TAIR10)
Tocopherol cyclase involved in tocopherol (vitamin E)synthesis. VTE1 over-expressing plants have increased tocopherol indicating VTE1 is a major limiting factor in tocopherol synthesis. Mutants defective in this gene accumulate high amounts of zeaxanthin in conditions of high light or low temperature. Plays a role in the adaptation to low temperature stress, notably phloem loading.
Computational
Description (TAIR10)
VITAMIN E DEFICIENT 1 (VTE1); FUNCTIONS IN: tocopherol cyclase activity; INVOLVED IN: in 9 processes; LOCATED IN: chloroplast, plastoglobule, chloroplast inner membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IGNNeggNOG:ENOG410XNU3EMBL:AK226552EnsemblPlants:AT4G32770EnsemblPlants:AT4G32770.1entrez:829413ExpressionAtlas:Q0WW11
GeneID:829413GO:GO:0009644GO:GO:0009976Gramene:AT4G32770.1gramene_pathway:2.1.1.-gramene_pathway:PWY-1422gramene_plant_reactome:1119287
gramene_plant_reactome:6874677gramene_plant_reactome:6875779hmmpanther:PTHR35309hmmpanther:PTHR35309:SF2InterPro:IPR025893iPTMnet:Q0WW11KEGG:ath:AT4G32770
KO:K09834OMA:PHSGYHWPaxDb:Q0WW11Pfam:PF14249Pfam:Q94FY7PhylomeDB:Q0WW11PRIDE:Q0WW11
ProteinModelPortal:Q0WW11RefSeq:NP_567906.1STRING:3702.AT4G32770.1TAIR:AT4G32770tair10-symbols:ATSDX1tair10-symbols:VTE1UniGene:At.22259
UniProt:Q0WW11UniProt:Q94FY7
Coordinates (TAIR10) chr4:+:15804981..15807790
Molecular Weight (calculated) 54723.40 Da
IEP (calculated) 6.26
GRAVY (calculated) -0.41
Length 488 amino acids
Sequence (TAIR10)
(BLAST)
001: MEIRSLIVSM NPNLSSFELS RPVSPLTRSL VPFRSTKLVP RSISRVSASI STPNSETDKI SVKPVYVPTS PNRELRTPHS GYHFDGTPRK FFEGWYFRVS
101: IPEKRESFCF MYSVENPAFR QSLSPLEVAL YGPRFTGVGA QILGANDKYL CQYEQDSHNF WGDRHELVLG NTFSAVPGAK APNKEVPPEE FNRRVSEGFQ
201: ATPFWHQGHI CDDGRTDYAE TVKSARWEYS TRPVYGWGDV GAKQKSTAGW PAAFPVFEPH WQICMAGGLS TGWIEWGGER FEFRDAPSYS EKNWGGGFPR
301: KWFWVQCNVF EGATGEVALT AGGGLRQLPG LTETYENAAL VCVHYDGKMY EFVPWNGVVR WEMSPWGYWY ITAENENHVV ELEARTNEAG TPLRAPTTEV
401: GLATACRDSC YGELKLQIWE RLYDGSKGKV ILETKSSMAA VEIGGGPWFG TWKGDTSNTP ELLKQALQVP LDLESALGLV PFFKPPGL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)