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AT4G32760.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ENTH/VHS/GAT family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ENTH/VHS/GAT family protein; FUNCTIONS IN: protein transporter activity; INVOLVED IN: intracellular protein transport, intra-Golgi vesicle-mediated transport; LOCATED IN: Golgi stack, plasma membrane; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: VHS (InterPro:IPR002014), GAT (InterPro:IPR004152), VHS subgroup (InterPro:IPR018205), ENTH/VHS (InterPro:IPR008942); BEST Arabidopsis thaliana protein match is: ENTH/VHS/GAT family protein (TAIR:AT3G08790.1); Has 20336 Blast hits to 14766 proteins in 697 species: Archae - 4; Bacteria - 772; Metazoa - 8080; Fungi - 4287; Plants - 2535; Viruses - 64; Other Eukaryotes - 4594 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410Y26GeggNOG:KOG1087EMBL:AY120724EMBL:BT000033EMBL:CP002687EnsemblPlants:AT4G32760EnsemblPlants:AT4G32760.1
entrez:829412ExpressionAtlas:Q8L860Gene3D:1.20.58.160Gene3D:1.25.40.90GeneID:829412GO:GO:0005622GO:GO:0006886
Gramene:AT4G32760.1hmmpanther:PTHR13856hmmpanther:PTHR13856:SF78HOGENOM:HOG000237674IntAct:Q8L860InterPro:IPR002014InterPro:IPR004152
InterPro:IPR008942Pfam:PF00790Pfam:PF03127Pfscan:PS50179Pfscan:PS50909PhylomeDB:Q8L860PROSITE:PS50179
PROSITE:PS50909Proteomes:UP000006548Reactome:R-ATH-432720RefSeq:NP_195002.2SMART:SM00288SMR:Q8L860STRING:3702.AT4G32760.2
SUPFAM:SSF48464SUPFAM:SSF89009TAIR:AT4G32760UniGene:At.46217UniGene:At.74836UniProt:Q8L860
Coordinates (TAIR10) chr4:+:15799376..15803832
Molecular Weight (calculated) 72967.50 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.64
Length 675 amino acids
Sequence (TAIR10)
(BLAST)
001: MVNAMVERAT SEMLIGPDWA MNLEICDMLN SDPAQAKDVV KGIKKRIGSR NPKAQLLALT LLETIVKNCG DMVHMHVAEK GVIHEMVRIV KKKPDFHVKE
101: KILVLIDTWQ EAFGGPRARY PQYYAGYQEL LRAGAVFPQR SERSAPVFTP PQTQPLTSYP PNLRNAGPGN DVPEPSAEPE FPTLSLSEIQ NAKGIMDVLA
201: EMLSALEPGN KEDLKQEVMV DLVEQCRTYK QRVVHLVNST SDESLLCQGL ALNDDLQRVL TNYEAIASGL PGTSSQIEKP KSETGKSLVD VDGPLIDTGD
301: SSNQANGATS SSGNGVLNQL ALPAPPVTNG SANSKIDLLS GDDLALVPVG PPQPASPVAS DQNALALIDM FSDNTNNPSP ATAPSGNPAQ NIPLNPQGHQ
401: QPNSQAGEAG LQQSNGFAPQ VGYSQFEQPS YGQGVSSPWS SQPAQQPVQP SYGAQDSTAF PPPPWEAQLQ DYSPSAESGS PFSPGMHPTQ TAFTHAQPVN
501: NNNPYPQIPQ TGPPVNNNSP YAQMPQTGQA VANISPYPQI PQNGVYMPNQ PNQALGSGYQ PQQQQQQQMM MAQYYAQQQQ LQQQQQQQAY GNQMGGYGYG
601: YNQQQQGSSP YLDQQMYGLS MRDQTSHQVA SSSSTTSYLP PMKPKNKPED KLFGDLVDIS KFKPTKPTSG RAGTM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)