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AT4G32720.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : La protein 1
Curator
Summary (TAIR10)
Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.
Computational
Description (TAIR10)
La protein 1 (La1); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development, ribosome biogenesis; LOCATED IN: nucleoplasm, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G79880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14694eggNOG:COG5193eggNOG:ENOG410IQXQEMBL:AL022537
EMBL:AL161582EMBL:AY056237EMBL:AY136302EMBL:BT000396
EMBL:CP002687EnsemblPlants:AT4G32720EnsemblPlants:AT4G32720.1EnsemblPlants:AT4G32720.2
entrez:829408ExpressionAtlas:Q93ZV7Gene3D:1.10.10.10Gene3D:3.30.70.330
GeneID:829408Genevisible:Q93ZV7GO:GO:0000166GO:GO:0003723
GO:GO:0005618GO:GO:0005654GO:GO:0005730GO:GO:0005829
GO:GO:0030529GO:GO:0034470hmmpanther:PTHR22792hmmpanther:PTHR22792:SF64
HOGENOM:HOG000239251InParanoid:Q93ZV7InterPro:IPR000504InterPro:IPR002344
InterPro:IPR006630InterPro:IPR011991InterPro:IPR012677InterPro:IPR014886
iPTMnet:Q93ZV7KEGG:ath:AT4G32720KO:K11090OMA:QKGSANQ
PaxDb:Q93ZV7Pfam:PF00076Pfam:PF05383Pfam:PF08777
Pfam:Q93ZV7Pfscan:PS50102Pfscan:PS50961PhylomeDB:Q93ZV7
PIR:T04453PRIDE:Q93ZV7PRINTS:PR00302PRO:PR:Q93ZV7
PROSITE:PS50102PROSITE:PS50961ProteinModelPortal:Q93ZV7Proteomes:UP000006548
RefSeq:NP_001031777.1RefSeq:NP_567904.1SMART:SM00360SMART:SM00715
SMR:Q93ZV7STRING:3702.AT4G32720.1SUPFAM:SSF46785SUPFAM:SSF54928
TAIR:AT4G32720tair10-symbols:AtLa1tair10-symbols:La1UniGene:At.2236
UniProt:Q93ZV7
Coordinates (TAIR10) chr4:+:15787313..15789683
Molecular Weight (calculated) 48098.00 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.81
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIPCLTEET AKTVLRQVEF YFSDSNLPID DFLKKTVTES EDGLVSLALI CSFSKMRGYL KLGDSKGDDI PEDTIKAVAD TLRTSSALKI SDDGKKVGRS
101: TELLKLEDLI EQLNARTVAA SPFSYDVKRE DVESFFSQYG KVNSVRMPRH VAESRIFSGV ALVEFPTEED AQNVMKQNLV FAGQELELKP KKEFDNEREK
201: DEVKFANYQP QKGSANQKNG SDHKNNSAYE PDYPKGLIIS FTLKRSAEEG TTEQKSSEEP TDKTMEESET KPADTPDADK ENTGEVQAEG AEDEDDEKEE
301: KGALATHKDN KDVVLREDLK AVFGKFGDVK FVDFKMGSET GYLRFDEPEA SQKARAAAVL ANEGGLAVKN FIAVLEPVIG EAEKEYWTLL RSKDRFDKGG
401: RGGRGGRRGG RFGRKRGSDS PGGRWNKSQK VEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)