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AT4G32720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : La protein 1
Curator
Summary (TAIR10)
Encodes AtLa1, a member of the highly abundant phosphoprotein La proteins. Predominantly localized to the nucleoplasm and was also detected in the nucleolar cavity. Has RNA binding activity. Required for normal ribosome biogenesis and embryogenesis.
Computational
Description (TAIR10)
La protein 1 (La1); FUNCTIONS IN: RNA binding; INVOLVED IN: embryo development, ribosome biogenesis; LOCATED IN: nucleoplasm, cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Winged helix-turn-helix transcription repressor DNA-binding (InterPro:IPR011991), RNA-binding protein Lupus La (InterPro:IPR006630), Lupus La protein (InterPro:IPR002344), RNA recognition motif, RNP-1 (InterPro:IPR000504), Nucleotide-binding, alpha-beta plait (InterPro:IPR012677), RNA-binding motif (InterPro:IPR014886); BEST Arabidopsis thaliana protein match is: RNA recognition motif (RRM)-containing protein (TAIR:AT1G79880.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14694eggNOG:COG5193eggNOG:ENOG410IQXQEMBL:AL022537EMBL:AL161582EMBL:AY056237EMBL:AY136302
EMBL:BT000396EMBL:CP002687EnsemblPlants:AT4G32720EnsemblPlants:AT4G32720.1EnsemblPlants:AT4G32720.2entrez:829408ExpressionAtlas:Q93ZV7
Gene3D:1.10.10.10Gene3D:3.30.70.330GeneID:829408Genevisible:Q93ZV7GO:GO:0000166GO:GO:0003723GO:GO:0005618
GO:GO:0005654GO:GO:0005730GO:GO:0005829GO:GO:0030529GO:GO:0034470hmmpanther:PTHR22792hmmpanther:PTHR22792:SF64
HOGENOM:HOG000239251InParanoid:Q93ZV7InterPro:IPR000504InterPro:IPR002344InterPro:IPR006630InterPro:IPR011991InterPro:IPR012677
InterPro:IPR014886iPTMnet:Q93ZV7KEGG:ath:AT4G32720KO:K11090OMA:QKGSANQPaxDb:Q93ZV7Pfam:PF00076
Pfam:PF05383Pfam:PF08777Pfam:Q93ZV7Pfscan:PS50102Pfscan:PS50961PhylomeDB:Q93ZV7PIR:T04453
PRIDE:Q93ZV7PRINTS:PR00302PRO:PR:Q93ZV7PROSITE:PS50102PROSITE:PS50961ProteinModelPortal:Q93ZV7Proteomes:UP000006548
RefSeq:NP_001031777.1RefSeq:NP_567904.1SMART:SM00360SMART:SM00715SMR:Q93ZV7STRING:3702.AT4G32720.1SUPFAM:SSF46785
SUPFAM:SSF54928TAIR:AT4G32720tair10-symbols:AtLa1tair10-symbols:La1UniGene:At.2236UniProt:Q93ZV7
Coordinates (TAIR10) chr4:+:15787313..15789683
Molecular Weight (calculated) 48098.00 Da
IEP (calculated) 4.80
GRAVY (calculated) -0.81
Length 433 amino acids
Sequence (TAIR10)
(BLAST)
001: MSIPCLTEET AKTVLRQVEF YFSDSNLPID DFLKKTVTES EDGLVSLALI CSFSKMRGYL KLGDSKGDDI PEDTIKAVAD TLRTSSALKI SDDGKKVGRS
101: TELLKLEDLI EQLNARTVAA SPFSYDVKRE DVESFFSQYG KVNSVRMPRH VAESRIFSGV ALVEFPTEED AQNVMKQNLV FAGQELELKP KKEFDNEREK
201: DEVKFANYQP QKGSANQKNG SDHKNNSAYE PDYPKGLIIS FTLKRSAEEG TTEQKSSEEP TDKTMEESET KPADTPDADK ENTGEVQAEG AEDEDDEKEE
301: KGALATHKDN KDVVLREDLK AVFGKFGDVK FVDFKMGSET GYLRFDEPEA SQKARAAAVL ANEGGLAVKN FIAVLEPVIG EAEKEYWTLL RSKDRFDKGG
401: RGGRGGRRGG RFGRKRGSDS PGGRWNKSQK VEA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)