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AT4G32620.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Enhancer of polycomb-like transcription factor protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Enhancer of polycomb-like transcription factor protein; FUNCTIONS IN: nucleic acid binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Tudor domain (InterPro:IPR002999), Enhancer of polycomb-like (InterPro:IPR019542); BEST Arabidopsis thaliana protein match is: Enhancer of polycomb-like transcription factor protein (TAIR:AT5G04670.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IKRIeggNOG:ENOG410XRKHEMBL:CP002687EnsemblPlants:AT4G32620EnsemblPlants:AT4G32620.1entrez:829397ExpressionAtlas:F4JV28
GeneID:829397Gramene:AT4G32620.1hmmpanther:PTHR12663hmmpanther:PTHR12663:SF8InterPro:IPR002999InterPro:IPR019542iPTMnet:F4JV28
PaxDb:F4JV28Pfam:PF10513PRIDE:F4JV28Proteomes:UP000006548RefSeq:NP_194988.2SMART:SM00333STRING:3702.AT4G32620.2
TAIR:AT4G32620UniGene:At.31652UniGene:At.46639UniProt:F4JV28
Coordinates (TAIR10) chr4:+:15731968..15737222
Molecular Weight (calculated) 173371.00 Da
IEP (calculated) 8.86
GRAVY (calculated) -0.76
Length 1539 amino acids
Sequence (TAIR10)
(BLAST)
0001: MENRLGNSNG VGISKKSRSL DLKTLYKSSI SKDSVNKSFK RKHRSGIDGD QLKQDKKSRK VVSLSSFKKV GSQNESILDK ACNGTTILHN LEDSKEVGLD
0101: EKLCDSNGLQ VISVGLASST IYVPRRRRDF VGRSRFENGL AQKSAGESDS QEELVVNIPK VTAEESSVQD QPSKVEEKDS DKDIKESNSA APLQLENGHS
0201: NQSPVKDDQL VVVKQRNSNS RKRKSSASNR RVGKEAKSSG DASGRISKVS REDDEENLEA NAAIMLSSRF DPNCTQFPSN SVTPGSPSAS RLHPLPSGKN
0301: SVDPRSELLS SKCVSDDTDD RMLRPRRHND DGKGKVRKRR HFYEILFSDV DSHWLLNKKI KVFWPLDERW YHGFVDGFDG DKNLHHVKYD DRDEEWINLQ
0401: GERFKILLFP SEVPGKNQRK RRCSESKSTQ KVKGNDTSSK DEEKQKEKLE DDSCMESEPI ITWLARSRHR DKSSTLKAVQ KRKKTDVMTS NESVKMNGDV
0501: TDRSASSLAS CGLPGPSKNE LESSGFRNGS IFPIVYCRRR LHTAKKDIYK ESGYNSVEFL KQFLVSKSPD PGVEFLPIED SGDLELCCPW NESEQFELSL
0601: SLQGVSLMSY FLMADVDWLS RAALLLRHGT LVTLWPRVRL EMIFLNNQDG LRYLIFEGCL MEVVQLIFRI LMVVDHSNKQ GAQGADADLQ LPVFSIGLQV
0701: SCIPGFQRQL GFQIYSFHEV KHSKWSYLEQ NVRRHSLLVK QVSIAECTHN NMKVLQKVMQ KRSRHGISSG LVSRGSSSAE AWPTSVCYKK QNTSPFALLF
0801: TARPPTLLLS LHLNMIRELG HDSADFLGIE RDLVTHRGCD MADFTNEHSE LSLKSKSQTD EPIITSSRAQ ESKDLHTPSQ SQQLGSDSEN WMSYSSSVVR
0901: HKHETRSNVS VNGISIQVPI SDDCEDGTPQ SSNLALNIQG SSNSSPKATA PRSMWNRSKS SLNGHLSHGW SDSKGDFLNT NLANGPKKRR TQVSYSLPSG
1001: GSDSRNKGSL LKGMPNKRIR RSTADVTKGI QKDLESSLCD ANVLVTLGDR GWREYGAQIF LEPFDNNEWR LAVKISGTTK YSHRAHQFLQ PGSVNRFTHA
1101: MMWKGGKDWT LEFPDRGQWF LFKEMHEECY NRNTRAALVR NIPIPGIRMI ERDNFDGTET EFIRSSSKYF RQTETDVEMA LDPSRVMYDM DSDDEQCLLR
1201: IRECSSAENS GSCEITEDMF EKAMDMFEKA SFVKQRDNFT LIEIQELTAG VGSLEAMETI YELWRTKRQR KGMPLIRHLQ PPLWEKYQRE LKDWELVMSK
1301: ANTPNSCGSQ KKQSPTEKPA MFAFCFKPRG LEVKHRGTKH RSQKKLSVYA QHSSALGDYD GCNSSGRRPV GFVSGDERFL YSNQSYEHSN EFSVHPGTYS
1401: PRDLGMGYFS SGGNGYHRNH QNKSQRINGK RNTSERWDAG YSECPSSNLV CYSNGSQRPD VEGIRNSTDI DEYKLRDAAG AARRACALAK LKRERAESLR
1501: YKADLAIQKA AAALMCAEAV KASSEDLGNN NGVESSSEG
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)