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AT4G32590.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : 2Fe-2S ferredoxin-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
2Fe-2S ferredoxin-like superfamily protein; FUNCTIONS IN: electron carrier activity, iron-sulfur cluster binding; LOCATED IN: chloroplast; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Ferredoxin (InterPro:IPR001041), Beta-grasp fold, ferredoxin-type (InterPro:IPR012675); BEST Arabidopsis thaliana protein match is: NDH-dependent cyclic electron flow 1 (TAIR:AT3G16250.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0633eggNOG:ENOG410IYGKEMBL:AY045965EMBL:AY133803EMBL:CP002687EnsemblPlants:AT4G32590EnsemblPlants:AT4G32590.1
entrez:829394ExpressionAtlas:Q94AK9Gene3D:3.10.20.30GeneID:829394GO:GO:0009055GO:GO:0046872GO:GO:0051536
Gramene:AT4G32590.1hmmpanther:PTHR23426hmmpanther:PTHR23426:SF32HOGENOM:HOG000242320IntAct:Q94AK9InterPro:IPR001041InterPro:IPR012675
Pfam:PF00111PhylomeDB:Q94AK9Proteomes:UP000006548RefSeq:NP_567899.1STRING:3702.AT4G32590.3SUPFAM:SSF54292TAIR:AT4G32590
UniGene:At.2244UniProt:Q94AK9
Coordinates (TAIR10) chr4:+:15721417..15722776
Molecular Weight (calculated) 18664.20 Da
IEP (calculated) 9.52
GRAVY (calculated) -0.45
Length 173 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLGFNLGF TFSNAQIQQH RKVSGGGRAR VISCNSSSSS SSQASSPQGI SAVTPLEIEL EFFGPKPGSD GSYPVDKAKA VSGDKLLRSI MQDNKIELYA
101: AYGKVMNCGG GGSCGTCIVE ILDGRDLLNE RTDTENRYLK KKPESWRLAC QTIVGNKENS GKVVVQRIPQ WKK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)