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AT4G32540.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.713
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Flavin-binding monooxygenase family protein
Curator
Summary (TAIR10)
Mutant has elevated levels of free IAA in dominant mutant allele; Flavin Monooxygenase-Like Enzyme; Auxin Biosynthesis
Computational
Description (TAIR10)
YUCCA 1 (YUC1); FUNCTIONS IN: NADP or NADPH binding, oxidoreductase activity, FAD binding, flavin-containing monooxygenase activity; INVOLVED IN: in 7 processes; EXPRESSED IN: 12 plant structures; EXPRESSED DURING: C globular stage, F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pyridine nucleotide-disulphide oxidoreductase, class-II (InterPro:IPR000103), FAD-dependent pyridine nucleotide-disulphide oxidoreductase (InterPro:IPR013027), Flavin-containing monooxygenase-like (InterPro:IPR020946); BEST Arabidopsis thaliana protein match is: Flavin-binding monooxygenase family protein (TAIR:AT5G11320.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
Protein Annotations
BRENDA:1.14.13.168EC:1.14.13.168eggNOG:COG2072eggNOG:KOG1399EMBL:AL050398EMBL:AL161581EMBL:AY057102
EMBL:CP002687EnsemblPlants:AT4G32540EnsemblPlants:AT4G32540.1entrez:829389Gene3D:3.50.50.60GeneID:829389Genevisible:Q9SZY8
GO:GO:0004497GO:GO:0004499GO:GO:0009851GO:GO:0009911GO:GO:0010229GO:GO:0048825GO:GO:0048827
GO:GO:0050660GO:GO:0050661GO:GO:0055114Gramene:AT4G32540.1hmmpanther:PTHR23023hmmpanther:PTHR23023:SF37HOGENOM:HOG000240759
InParanoid:Q9SZY8InterPro:IPR000103InterPro:IPR020946InterPro:IPR023753KEGG:ath:AT4G32540KO:K11816OMA:YLSKWLI
PaxDb:Q9SZY8Pfam:PF00743Pfam:Q9SZY8PhylomeDB:Q9SZY8PIR:T08587PRIDE:Q9SZY8PRINTS:PR00469
PRO:PR:Q9SZY8ProteinModelPortal:Q9SZY8Proteomes:UP000006548RefSeq:NP_194980.1SMR:Q9SZY8STRING:3702.AT4G32540.1SUPFAM:SSF51905
TAIR:AT4G32540tair10-symbols:YUCtair10-symbols:YUC1UniGene:At.54581UniPathway:UPA00151UniProt:Q9SZY8
Coordinates (TAIR10) chr4:+:15700904..15702870
Molecular Weight (calculated) 46020.60 Da
IEP (calculated) 10.04
GRAVY (calculated) -0.29
Length 414 amino acids
Sequence (TAIR10)
(BLAST)
001: MESHPHNKTD QTQHIILVHG PIIIGAGPSG LATSACLSSR GVPSLILERS DSIASLWKSK TYDRLRLHLP KHFCRLPLLD FPEYYPKYPS KNEFLAYLES
101: YASHFRIAPR FNKNVQNAAY DSSSGFWRVK THDNTEYLSK WLIVATGENA DPYFPEIPGR KKFSGGKIVH ASEYKSGEEF RRQKVLVVGC GNSGMEISLD
201: LVRHNASPHL VVRNTVHVLP REILGVSTFG VGMTLLKCLP LRLVDKFLLL MANLSFGNTD RLGLRRPKTG PLELKNVTGK SPVLDVGAMS LIRSGMIQIM
301: EGVKEITKKG AKFMDGQEKD FDSIIFATGY KSNVPTWLQG GDFFTDDGMP KTPFPNGWRG GKGLYTVGFT RRGLLGTASD AVKIAGEIGD QWRDEIKGST
401: RNMCSSRFVF TSKS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)