suba logo
AT4G32420.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:30783145 (2019): extracellular region plant-type cell wall
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein; FUNCTIONS IN: peptidyl-prolyl cis-trans isomerase activity; INVOLVED IN: protein folding; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclophilin-like (InterPro:IPR015891), Peptidyl-prolyl cis-trans isomerase, cyclophilin-type (InterPro:IPR002130); BEST Arabidopsis thaliana protein match is: Cyclophilin-like peptidyl-prolyl cis-trans isomerase family protein (TAIR:AT3G63400.3); Has 85791 Blast hits to 46641 proteins in 2754 species: Archae - 115; Bacteria - 10973; Metazoa - 41905; Fungi - 9982; Plants - 5732; Viruses - 973; Other Eukaryotes - 16111 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G32420-MONOMERBioCyc:ARA:GQT-1081-MONOMERBioCyc:ARA:GQT-1163-MONOMERBioGrid:14663
EC:5.2.1.8eggNOG:COG0652eggNOG:KOG0865EMBL:AL034567
EMBL:AL161581EMBL:AY091023EMBL:AY568529EMBL:CP002687
EnsemblPlants:AT4G32420EnsemblPlants:AT4G32420.1EnsemblPlants:AT4G32420.2EnsemblPlants:AT4G32420.3
EnsemblPlants:AT4G32420.4entrez:829377ExpressionAtlas:Q8RWY7Gene3D:2.40.100.10
GeneID:829377Genevisible:Q8RWY7GO:GO:0003755GO:GO:0005634
GO:GO:0006457hmmpanther:PTHR11071hmmpanther:PTHR11071:SF255HOGENOM:HOG000064654
IntAct:Q8RWY7InterPro:IPR002130InterPro:IPR024936InterPro:IPR029000
iPTMnet:Q8RWY7KEGG:ath:AT4G32420KO:K01802OMA:SEQISDR
PANTHER:PTHR11071PaxDb:Q8RWY7Pfam:PF00160Pfam:Q8RWY7
Pfscan:PS50072PIR:T05352PRIDE:Q8RWY7PRINTS:PR00153
PRO:PR:Q8RWY7PROSITE:PS50072ProteinModelPortal:Q8RWY7Proteomes:UP000006548
RefSeq:NP_001119097.1RefSeq:NP_001190888.1RefSeq:NP_001190889.1RefSeq:NP_194968.2
SMR:Q8RWY7STRING:3702.AT4G32420.1SUPFAM:SSF50891TAIR:AT4G32420
UniGene:At.27622UniProt:Q8RWY7
Coordinates (TAIR10) chr4:-:15647550..15652103
Molecular Weight (calculated) 94635.70 Da
IEP (calculated) 12.44
GRAVY (calculated) -1.37
Length 837 amino acids
Sequence (TAIR10)
(BLAST)
001: MAKKKNPQVF MDVSIDGDPA ETMVFELFPE VAPKTSENFR ALCTGEKGIG PRSGKPLHYK GSFFHRIMKG SSAQAGDFVN RNGTAGESIY AGKFPDESPK
101: LRHEETGLLS MSIADRDKFG SHFHITFRPN QQLDRNNVVF GKLIQGKEIL KKIERVGDEE GKPTVSVKII RCGEYSGDKK KSDGKKNGKH KKSLRVRRKK
201: RRRHSSSESE SSSDSETDSS ESDSESDSDL SSPSFLSSSS HERQKKRKRS SKKDKHRRSK QRDKRHEKKR SMRDKRPKRK SRRSPDSLED SNSGSEASLS
301: DVNVEIGAKK RKHRVSRRTG NSAPAVEKEA ESLHQGKRKG PDLLENRGLR SNGISDAASE QISDRQPDIV DDHPSKSRSR SLSPKRTVSK STSVSPRRSQ
401: SKSPSSSPRW NGGRSPAKGS RQVKNLTNSR RESPGSEEKG RHVRRSPTKS VSRSPVRVKK ERDISRSPSK SLSRSPLRSP KRVISRSPVR GRIARSPSRS
501: PVRSASRGSL GRGPLRRSSR RSPSRSPVRS SRRSLSRSPI QLSRRSLSRS PTRLSRRSLS RSPIRSPRKS VSRSPVRSSR KSVSRSPVRS SRRRISRSPV
601: RSSRKSVSRS PIRLSRRSIS RSPIRLSRRS ISRSPVRGRR RISRSPVPAR RRSVRPRSPP PDRRRSLSRS ASPNGRIRRG RGFSQRFSYA RRYRTSPSPD
701: RSPYRFSDRS DRDRFRSRRR FSPSRFRSPL RGRTPPRYRR RSRSVSPGLC YRNRRYSRSP IRSRSPPYRK RRSPSASHSL SPSRSRSRSK SYSKSPIGTG
801: KARSVSRSPS KARSPSKSDS TSSDNSPGGK KGLVAYD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)