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AT4G32330.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 0.968
ASURE: cytoskeleton
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:26781341 (2016): plasma membrane
  • PMID:24134884 (2013): cytoskeleton microtubules
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : TPX2 (targeting protein for Xklp2) protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
TPX2 (targeting protein for Xklp2) protein family; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Xklp2 targeting protein (InterPro:IPR009675); BEST Arabidopsis thaliana protein match is: TPX2 (targeting protein for Xklp2) protein family (TAIR:AT2G25480.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IEYFeggNOG:ENOG410YGX4EMBL:AL021811EMBL:AL034567
EMBL:AL161581EMBL:AY035182EMBL:AY113894EMBL:BX828309
EMBL:CP002687EnsemblPlants:AT4G32330EnsemblPlants:AT4G32330.1EnsemblPlants:AT4G32330.2
EnsemblPlants:AT4G32330.3entrez:829367ExpressionAtlas:Q94C48GeneID:829367
GO:GO:0005737GO:GO:0005874hmmpanther:PTHR31358hmmpanther:PTHR31358:SF10
HOGENOM:HOG000120700InterPro:IPR027329KEGG:ath:AT4G32330ncoils:Coil
OMA:MNEDRADPfam:PF06886PhylomeDB:Q94C48PIR:T05343
PIR:T05396Proteomes:UP000006548RefSeq:NP_001119094.1RefSeq:NP_567893.1
RefSeq:NP_974659.1STRING:3702.AT4G32330.1TAIR:AT4G32330UniGene:At.20919
UniProt:Q94C48
Coordinates (TAIR10) chr4:+:15609801..15611867
Molecular Weight (calculated) 47545.40 Da
IEP (calculated) 8.99
GRAVY (calculated) -1.11
Length 437 amino acids
Sequence (TAIR10)
(BLAST)
001: MDPESIMAAD GTDSAPANGG LAMENVCVKE NGAVSVETVD TTSESQNENS ANSSTLDTIE HVKEAAEGTQ VEHVDDSKCM KGEKAQRKPR HEKLSGGKNN
101: SSVHIKKSKE GKSADAKVAA SNGSVAPNVQ TTNPLKSKSF NGREAQVTKQ GKHDSAPAES ADGEKVKPKS QKKQAHETSE DDTQSSNSPK ADDGKPRKVG
201: ALPNYGFSFK CDQRAEKRKE FYVKLEEKTH AKEEEINSMQ AKSKETQEAE LRMLRKSLNF KATPMPSFYQ EPQPPKTELK KIPPTRPKSP KLGRKKTASG
301: ADSEETQTPR LGRLSLDERA SKDNPTAKGI MPTVDLKKQP VRKSLPRLPS QKTVLPDGKP APAKAAIIPA KVRPEKKKLE KDAETVNQTS HPTEEEAQVT
401: VSSNADVEDS HETVSPRMNE DRADKSIEVS EAVAVEH
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)