suba logo
AT4G32320.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:27137770 (2016): plastid plastid stroma
  • PMID:24872594 (2014): plastid
  • PMID:24124904 (2013): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ascorbate peroxidase 6
Curator
Summary (TAIR10)
Encodes a cytosolic ascorbate peroxidase APX6. Ascorbate peroxidases are enzymes that scavenge hydrogen peroxide in plant cells. Eight types of APX have been described for Arabidopsis: three cytosolic (APX1, APX2, APX6), two chloroplastic types (stromal sAPX, thylakoid tAPX), and three microsomal (APX3, APX4, APX5) isoforms.
Computational
Description (TAIR10)
ascorbate peroxidase 6 (APX6); FUNCTIONS IN: L-ascorbate peroxidase activity, peroxidase activity, heme binding; INVOLVED IN: response to oxidative stress, oxidation reduction; LOCATED IN: cytosol; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant ascorbate peroxidase (InterPro:IPR002207), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: ascorbate peroxidase 2 (TAIR:AT3G09640.2); Has 8064 Blast hits to 8032 proteins in 1269 species: Archae - 53; Bacteria - 2233; Metazoa - 2; Fungi - 806; Plants - 4037; Viruses - 0; Other Eukaryotes - 933 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G32320-MONOMERBioGrid:14652EC:1.11.1.11eggNOG:COG0376
eggNOG:ENOG410IQ3YEMBL:AK117784EMBL:AL021811EMBL:AL034567
EMBL:AL161581EMBL:BT008349EMBL:CP002687EnsemblPlants:AT4G32320
EnsemblPlants:AT4G32320.1entrez:829366GeneID:829366Genevisible:Q8GY91
GO:GO:0004601GO:GO:0005829GO:GO:0006979GO:GO:0009845
GO:GO:0010431GO:GO:0016688GO:GO:0020037GO:GO:0042744
GO:GO:0046872GO:GO:0098869Gramene:AT4G32320.1hmmpanther:PTHR31356
hmmpanther:PTHR31356:SF4HOGENOM:HOG000189824InParanoid:Q8GY91InterPro:IPR002016
InterPro:IPR002207InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794
iPTMnet:Q8GY91KEGG:ath:AT4G32320KO:K00434OMA:VDRPENT
PaxDb:Q8GY91PeroxiBase:3952Pfam:PF00141Pfam:Q8GY91
Pfscan:PS50873PhylomeDB:Q8GY91PIR:T05342PRIDE:Q8GY91
PRINTS:PR00458PRINTS:PR00459PRO:PR:Q8GY91PROSITE:PS00435
PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q8GY91Proteomes:UP000006548
RefSeq:NP_194958.2scanprosite:PS00435scanprosite:PS00436SMR:Q8GY91
STRING:3702.AT4G32320.1SUPFAM:SSF48113TAIR:AT4G32320tair10-symbols:APX6
UniGene:At.31673UniProt:Q8GY91
Coordinates (TAIR10) chr4:+:15602777..15605234
Molecular Weight (calculated) 36241.70 Da
IEP (calculated) 9.17
GRAVY (calculated) -0.18
Length 329 amino acids
Sequence (TAIR10)
(BLAST)
001: MTTTTASLVK TFLFRCDSFS SFKFKCKFES PAKTRLLSPA TEKHVVRSSR AWRIRCLSDD PGSSHVFVAS RRKMVVLLST VQLLSHMLPQ NGNAAEIYPV
101: MQNEIRKVVT KGKAAGVLRL VFHDAGTFEL DDHSGGINGS IAYELERPEN IGLKKSLKVL AKAKVKVDEI QPVSWADMIS VAGSEAVSIC GGPTIPVVLG
201: RLDSAQPDPE GKLPPETLSA SGLKECFKRK GFSTQELVAL SGAHTIGSKG FGDPTVFDNA YYKILLEKPW TSTSKMTSMV GLPSDHALVQ DDECLRWVKR
301: YAEDQDKFFE DFTNAYIKLV NSGAKWNML
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)