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AT4G32050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 0.886
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : neurochondrin family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
neurochondrin family protein; FUNCTIONS IN: binding; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 9 growth stages; CONTAINS InterPro DOMAIN/s: Armadillo-type fold (InterPro:IPR016024), Neurochondrin (InterPro:IPR008709); Has 174 Blast hits to 168 proteins in 66 species: Archae - 0; Bacteria - 0; Metazoa - 110; Fungi - 7; Plants - 49; Viruses - 0; Other Eukaryotes - 8 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XRYTeggNOG:KOG2611EMBL:BT021109EMBL:CP002687EnsemblPlants:AT4G32050EnsemblPlants:AT4G32050.1entrez:829336
GeneID:829336Gramene:AT4G32050.1hmmpanther:PTHR13109HOGENOM:HOG000239580InterPro:IPR008709InterPro:IPR016024KEGG:ath:AT4G32050
OMA:IRESTIMPANTHER:PTHR13109Pfam:PF05536PhylomeDB:Q5E911Proteomes:UP000006548RefSeq:NP_194933.2SUPFAM:SSF48371
TAIR:AT4G32050UniGene:At.28293UniProt:Q5E911
Coordinates (TAIR10) chr4:+:15496620..15500717
Molecular Weight (calculated) 68275.00 Da
IEP (calculated) 4.62
GRAVY (calculated) 0.18
Length 618 amino acids
Sequence (TAIR10)
(BLAST)
001: MAAAPQEERS PSLDDCLKLL KGERDEQRLA GLLLVTKFCK NDDIVSLNKV YEAVGTHFLD RLFRTGSGSG DGVDNRDVYL QISITVLAAF CRVPEIASSE
101: EMVSRIPLIL EVMSKGITTN MLEDCYELLY LVSTACEAGL MTLINSGGLR VIAPQMSELP DGSHAMEVAI KILQLLVSKL DCGSMTIERF LELSLVIAAV
201: ARQFAVLHNA LKFEALHLLS AVFSSEYSEL LHEPLRSMPD NNWADYMRTG VVAILQNRVA PSEKLHALIL AENMMSILGE KWLLGGVKLP NVDIPADRCL
301: LLVLESSHVE ISVLLNDLAY KKYEAPKDNS TAEDILLKQR YLPIVFSLVE KIIKYISSAG ENEGTLSDEA VFQKVIKILN ETVGAVFEYL RDAKEHGIKK
401: GTDLLASVRV IGSYLAETPV ACKEQVQDLL DYMLSVKGED ESSPFLSTCF LLPMLCQITM NAEGCKLLAY SRGDVAVVEC LIKLIERCGE SVDEDRSIFL
501: ACDTIMNILL KREEISPPEI STFASLLKAL AYWADGSNDH SVVMMAASIC SLIFDFTSED ALQLSRSSLD SLARLVTRSL SSSGQDMSDT ADLLEIIRAG
601: YSRWINRFPT IMKHPVVQ
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)