AT4G31980.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plasma membrane 0.898 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
unknown protein; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF247, plant (InterPro:IPR004158), Protein of unknown function DUF862, eukaryotic (InterPro:IPR008580); BEST Arabidopsis thaliana protein match is: Plant protein of unknown function (DUF247) (TAIR:AT5G11290.1); Has 1967 Blast hits to 1844 proteins in 183 species: Archae - 0; Bacteria - 6; Metazoa - 223; Fungi - 83; Plants - 1477; Viruses - 0; Other Eukaryotes - 178 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15464905..15469204 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77687.80 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.22 | ||||||||||||||||||||||||||||||||||||
| Length | 680 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MFCRNVSVRR KKNSGTVPVY LNVYDLTPMN VYGYWLGIGI YHSGLEVHGV EYGYGAHEKS SSGIFEVEPK KCPGFTFRKS ILVGETEMKA KEVRSFMEKL 101: SEEYQGNKYH LITRNCNHFC NHVSLKLTHK SIPSWVNRLA RLGFLCNCVL PACLNETKVK RVGKDGKLLL EGENTKKKKR KKKIRRSRSG PLSSSSSNAR 201: LDNTPTHNRS ISTGNPPLSA SPSCPLRPRL PSVASGAEDQ NPPSRYLNAS FCSEVQCHRL CFAYERMNQN EGDALVDSIK AKLAFLSSLS TKCCIYKVPN 301: KLRRLNPDAY TPRLVSFGPL HRGKEELQAM EDQKYRYLLS FIPRTNSSLE DLVRLARTWE QNARSCYAED VKLHSDEFVE MLVVDGSFLV ELLLRSHYPR 401: LRGENDRIFG NSMMITDVCR DMILIENQLP FFVVKEIFLL LLNYYQQGTP SIIQLAQRHF SYFLSRIDDE KFITEPEHFV DLLRSCYLPQ FPIKLEYTTV 501: KVDNAPEATE LHTAGVRFKP AETSSCLLDI SFADGVLKIP TIVVDDLTES LYKNIIGFEQ CRCSNKNFLD YIMLLGCFIK SPTDADLLIH SGIIVNYLGN 601: SVDVSNLFNS ISKEVIYDRR FYFSMLSENL QAYCNTPWNR WKAILRRDYF HNPWAVASVF AALLLLLLTF IQSVCSILAL |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)