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AT4G31920.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : response regulator 10
Curator
Summary (TAIR10)
Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.
Computational
Description (TAIR10)
response regulator 10 (RR10); CONTAINS InterPro DOMAIN/s: Response regulator, plant B-type (InterPro:IPR017053), Myb-like DNA-binding domain, SHAQKYF class (InterPro:IPR006447), CheY-like (InterPro:IPR011006), Homeodomain-like (InterPro:IPR009057), Myb, DNA-binding (InterPro:IPR014778), Signal transduction response regulator, receiver domain (InterPro:IPR001789), HTH transcriptional regulator, Myb-type, DNA-binding (InterPro:IPR017930), Homeodomain-related (InterPro:IPR012287); BEST Arabidopsis thaliana protein match is: response regulator 12 (TAIR:AT2G25180.1); Has 117582 Blast hits to 116317 proteins in 3081 species: Archae - 744; Bacteria - 104604; Metazoa - 49; Fungi - 620; Plants - 2843; Viruses - 4; Other Eukaryotes - 8718 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0745eggNOG:ENOG410IMXQEMBL:AK228149EnsemblPlants:AT4G31920EnsemblPlants:AT4G31920.1entrez:829322ExpressionAtlas:Q0WRZ4
Gene3D:1.10.10.60GeneID:829322GO:GO:0000160GO:GO:0003677GO:GO:0003700GO:GO:0005634GO:GO:0006351
Gramene:AT4G31920.1hmmpanther:PTHR26402hmmpanther:PTHR26402:SF423InterPro:IPR001005InterPro:IPR001789InterPro:IPR006447InterPro:IPR009057
InterPro:IPR011006InterPro:IPR017053InterPro:IPR017930KEGG:ath:AT4G31920KO:K14491OMA:DVHSKPDPaxDb:Q0WRZ4
Pfam:O49397Pfam:PF00072Pfam:PF00249Pfscan:PS50110Pfscan:PS51294PhylomeDB:Q0WRZ4PIRSF:PIRSF036392
PRIDE:Q0WRZ4PROSITE:PS50110PROSITE:PS51294ProteinModelPortal:Q0WRZ4RefSeq:NP_194920.1SMART:SM00448SMR:Q0WRZ4
STRING:3702.AT4G31920.1SUPFAM:SSF46689SUPFAM:SSF52172TAIR:AT4G31920tair10-symbols:ARR10tair10-symbols:RR10TIGRfam:TIGR01557
TIGRFAMs:TIGR01557UniGene:At.122UniProt:O49397UniProt:Q0WRZ4
Coordinates (TAIR10) chr4:-:15444290..15446766
Molecular Weight (calculated) 61655.70 Da
IEP (calculated) 6.23
GRAVY (calculated) -0.60
Length 552 amino acids
Sequence (TAIR10)
(BLAST)
001: MTMEQEIEVL DQFPVGMRVL AVDDDQTCLR ILQTLLQRCQ YHVTTTNQAQ TALELLRENK NKFDLVISDV DMPDMDGFKL LELVGLEMDL PVIMLSAHSD
101: PKYVMKGVKH GACDYLLKPV RIEELKNIWQ HVVRKSKLKK NKSNVSNGSG NCDKANRKRK EQYEEEEEEE RGNDNDDPTA QKKPRVLWTH ELHNKFLAAV
201: DHLGVERAVP KKILDLMNVD KLTRENVASH LQKFRVALKK VSDDAIQQAN RAAIDSHFMQ MNSQKGLGGF YHHHRGIPVG SGQFHGGTTM MRHYSSNRNL
301: GRLNSLGAGM FQPVSSSFPR NHNDGGNILQ GLPLEELQIN NNINRAFPSF TSQQNSPMVA PSNLLLLEGN PQSSSLPSNP GFSPHFEISK RLEHWSNAAL
401: STNIPQSDVH SKPDTLEWNA FCDSASPLVN PNLDTNPASL CRNTGFGSTN AAQTDFFYPL QMNQQPANNS GPVTEAQLFR SSNPNEGLLM GQQKLQSGLM
501: ASDAGSLDDI VNSLMTQEQS QSDFSEGDWD LDGLAHSEHA YEKLHFPFSL SA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)