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AT4G31880.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24134884 (2013): cytoskeleton microtubules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding :
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
LOCATED IN: cytosol, chloroplast; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Tudor/PWWP/MBT superfamily protein (TAIR:AT1G15940.1); Has 137162 Blast hits to 70781 proteins in 2973 species: Archae - 289; Bacteria - 24182; Metazoa - 56725; Fungi - 20130; Plants - 6559; Viruses - 758; Other Eukaryotes - 28519 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XQW7eggNOG:KOG1525EMBL:BT002315EMBL:CP002687EnsemblPlants:AT4G31880EnsemblPlants:AT4G31880.1entrez:829318
ExpressionAtlas:Q8GUP3GeneID:829318GO:GO:0005829GO:GO:0009507Gramene:AT4G31880.1hmmpanther:PTHR12663hmmpanther:PTHR12663:SF3
HOGENOM:HOG000148306InterPro:IPR016024ncoils:CoilOMA:QNDSSVDPhylomeDB:Q8GUP3Proteomes:UP000006548Reactome:R-ATH-2468052
Reactome:R-ATH-2470946RefSeq:NP_194916.2STRING:3702.AT4G31880.1SUPFAM:SSF48371SUPFAM:SSF63748TAIR:AT4G31880UniGene:At.31705
UniProt:Q8GUP3
Coordinates (TAIR10) chr4:-:15419435..15423939
Molecular Weight (calculated) 94213.80 Da
IEP (calculated) 5.32
GRAVY (calculated) -0.98
Length 873 amino acids
Sequence (TAIR10)
(BLAST)
001: MSDSDKELEN QIIEAGEKLI DPPSSLDELL SFLDKLFVSL AEVEQSPPDS MQNALTPLMK GLVGGKLFKH SDVDVKVAVA ACISEITRIT APDAPYDDDQ
101: MKEVFKLIVS SFEDLVDKSS RSYAKRISIL ETVAKVRSCV VMLDLECDAL LIEMFQHFLK AIRDHHSGNV FSSMENIMTL VLEESEDIPS EMLSPILHSV
201: KKDDEISQVS RRLAEQVLSN CASKLKTYLT EAVKSSGVPL DKYSNIVASI CEGTFSALQQ DQVVANEKED SQGHIKRETE VEKAAEISTP ERTDAPKDES
301: GKSGVSNGVA QQNDSSVDTD SMKKQDDTGA KDEPQQLDNP RNTDLNNTTE EKPDVEHQIE EKENESSSVK QADLSKDSDI KEETEPAELL DSKDVLTSPP
401: VDSSVTAATS SENEKNKSVQ ILPSKTSGDE TANVSSPSMA EELPEQSVPK KTANQKKKES STEEVKPSAS IATEEVSEEP NTSEPQVTKK SGKKVASSSK
501: TKPTVPPSKK STSETKVAKQ SEKKVVGSDN AQESTKPKEE KKKPGRGKAI DEESLHTSSG DNEKPAVSSG KLASKSKKEA KQTVEESPNS NTKRKRSLGQ
601: GKASGESLVG SRIKVWWPMD QAYYKGVVES YDAAKKKHLV IYDDGDQEIL YLKNQKWSPL DESELSQDEE AADQTGQEED ASTVPLTKKA KTGKQSKMDN
701: SSAKKGSGAG SSKAKATPAS KSSKTSQDDK TASKSKDSKE ASREEEASSE EESEEEEPPK TVGKSGSSRS KKDISSVSKS GKSKASSKKK EEPSKATTSS
801: KSKSGPVKSV PAKSKTGKGK AKSGSASTPA SKAKESASES ESEETPKEPE PATKAKSGKS QGSQSKSGKK RKR
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)