AT4G31850.1
|
Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 ASURE: plastid What is SUBAcon? |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Experimental Localisations and PPI |
|
||||||||||||||||||||||||||||||||||||||||||||||||
|
SUBAcon links
AGI-AGI relationships |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Description (TAIR10) | protein_coding : proton gradient regulation 3 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
encodes a protein containing 27 pentatrico-peptide repeat (PPR) motifs | ||||||||||||||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
proton gradient regulation 3 (PGR3); CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT3G06920.1); Has 108367 Blast hits to 15783 proteins in 329 species: Archae - 17; Bacteria - 129; Metazoa - 1401; Fungi - 2165; Plants - 100462; Viruses - 0; Other Eukaryotes - 4193 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
|
||||||||||||||||||||||||||||||||||||||||||||||||
| Coordinates (TAIR10) | chr4:+:15403020..15406358 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 124201.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 6.75 | ||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.04 | ||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1112 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MVALLCSASL CGDISVGDAC LVSNIKAKCR DNLVTGGLKF HALKIGSRKK HWRRKSMRCS VVSMKSSDFS GSMIRKSSKP DLSSSEEVTR GLKSFPDTDS 0101: SFSYFKSVAG NLNLVHTTET CNYMLEALRV DGKLEEMAYV FDLMQKRIIK RDTNTYLTIF KSLSVKGGLK QAPYALRKMR EFGFVLNAYS YNGLIHLLLK 0201: SRFCTEAMEV YRRMILEGFR PSLQTYSSLM VGLGKRRDID SVMGLLKEME TLGLKPNVYT FTICIRVLGR AGKINEAYEI LKRMDDEGCG PDVVTYTVLI 0301: DALCTARKLD CAKEVFEKMK TGRHKPDRVT YITLLDRFSD NRDLDSVKQF WSEMEKDGHV PDVVTFTILV DALCKAGNFG EAFDTLDVMR DQGILPNLHT 0401: YNTLICGLLR VHRLDDALEL FGNMESLGVK PTAYTYIVFI DYYGKSGDSV SALETFEKMK TKGIAPNIVA CNASLYSLAK AGRDREAKQI FYGLKDIGLV 0501: PDSVTYNMMM KCYSKVGEID EAIKLLSEMM ENGCEPDVIV VNSLINTLYK ADRVDEAWKM FMRMKEMKLK PTVVTYNTLL AGLGKNGKIQ EAIELFEGMV 0601: QKGCPPNTIT FNTLFDCLCK NDEVTLALKM LFKMMDMGCV PDVFTYNTII FGLVKNGQVK EAMCFFHQMK KLVYPDFVTL CTLLPGVVKA SLIEDAYKII 0701: TNFLYNCADQ PANLFWEDLI GSILAEAGID NAVSFSERLV ANGICRDGDS ILVPIIRYSC KHNNVSGART LFEKFTKDLG VQPKLPTYNL LIGGLLEADM 0801: IEIAQDVFLQ VKSTGCIPDV ATYNFLLDAY GKSGKIDELF ELYKEMSTHE CEANTITHNI VISGLVKAGN VDDALDLYYD LMSDRDFSPT ACTYGPLIDG 0901: LSKSGRLYEA KQLFEGMLDY GCRPNCAIYN ILINGFGKAG EADAACALFK RMVKEGVRPD LKTYSVLVDC LCMVGRVDEG LHYFKELKES GLNPDVVCYN 1001: LIINGLGKSH RLEEALVLFN EMKTSRGITP DLYTYNSLIL NLGIAGMVEE AGKIYNEIQR AGLEPNVFTF NALIRGYSLS GKPEHAYAVY QTMVTGGFSP 1101: NTGTYEQLPN RA |
||||||||||||||||||||||||||||||||||||||||||||||||
| See Also |
|
||||||||||||||||||||||||||||||||||||||||||||||||
Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)