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AT4G31720.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : TBP-associated factor II 15
Curator
Summary (TAIR10)
Arabidopsis thaliana putative TBP-associated 15 kDa subunit protein (TAFII15)
Computational
Description (TAIR10)
TBP-associated factor II 15 (TAFII15); FUNCTIONS IN: RNA polymerase II transcription factor activity, sequence-specific DNA binding transcription factor activity; INVOLVED IN: transcription initiation; LOCATED IN: nucleus; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Transcription initiation factor TFIID, 23-30kDa subunit (InterPro:IPR003923); Has 372 Blast hits to 372 proteins in 163 species: Archae - 0; Bacteria - 0; Metazoa - 153; Fungi - 132; Plants - 56; Viruses - 0; Other Eukaryotes - 31 (source: NCBI BLink).
Protein Annotations
BioGrid:14586eggNOG:COG5162eggNOG:KOG3423EMBL:AF344879
EMBL:AF352813EMBL:AK117827EMBL:AK317292EMBL:AL031004
EMBL:AL161579EMBL:AY086560EMBL:AY463628EMBL:BT004724
EMBL:CP002687EMBL:Y12904EnsemblPlants:AT4G31720EnsemblPlants:AT4G31720.1
EnsemblPlants:AT4G31720.2entrez:829300GeneID:829300Genevisible:O04173
GO:GO:0005634GO:GO:0006352GO:GO:0006355Gramene:AT4G31720.1
Gramene:AT4G31720.2hmmpanther:PTHR21242hmmpanther:PTHR21242:SF0HOGENOM:HOG000285966
InParanoid:O04173IntAct:O04173InterPro:IPR003923iPTMnet:O04173
KEGG:ath:AT4G31720KO:K03134OMA:CKARQASPANTHER:PTHR21242
PaxDb:O04173Pfam:O04173Pfam:PF03540PhylomeDB:O04173
PIR:T05098PIRSF:PIRSF017246PRIDE:O04173PRINTS:PR01443
PRO:PR:O04173ProteinModelPortal:O04173Proteomes:UP000006548Reactome:R-ATH-674695
Reactome:R-ATH-73776Reactome:R-ATH-73779Reactome:R-ATH-75953Reactome:R-ATH-76042
RefSeq:NP_194900.1RefSeq:NP_849481.1SMR:O04173STRING:3702.AT4G31720.1
TAIR:AT4G31720tair10-symbols:STG1tair10-symbols:TAF10tair10-symbols:TAFII15
UniGene:At.25011UniProt:O04173
Coordinates (TAIR10) chr4:-:15354223..15355704
Molecular Weight (calculated) 14913.60 Da
IEP (calculated) 5.59
GRAVY (calculated) -0.55
Length 134 amino acids
Sequence (TAIR10)
(BLAST)
001: MNHGQQSGEA KHEDDAALTE FLASLMDYTP TIPDDLVEHY LAKSGFQCPD VRLIRLVAVA TQKFVADVAS DALQHCKARP APVVKDKKQQ KDKRLVLTME
101: DLSKALREYG VNVKHPEYFA DSPSTGMDPA TRDE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)