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AT4G31700.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:31871212 (2020): mitochondrion
  • PMID:31615849 (2019): plastid plastid thylakoid
  • PMID:31541795 (2020): plasma membrane
  • PMID:31520498 (2020): mitochondrion
  • PMID:31023727 (2019): mitochondrion
  • PMID:30961429 (2019): nucleus
  • PMID:30783145 (2019): extracellular region plant-type cell wall
  • PMID:30447334 (2019): plasma membrane
  • PMID:29104584 (2017): nucleus nuclear matrix nucleolus
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): plant-type vacuole plant-type vacuole membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi
  • PMID:25641898 (2015): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:22550958 (2012): plastid
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
  • PMID:22215637 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:21841088 (2011): mitochondrion
  • PMID:21533090 (2011): extracellular region plant-type cell wall
  • PMID:21433285 (2011): plasma membrane
  • PMID:21166475 (2011): cytosol
  • PMID:20843791 (2010): plasma membrane
  • PMID:19334764 (2009): plasma membrane
  • PMID:18686298 (2008): plant-type vacuole plant-type vacuole membrane
  • PMID:17934214 (2008): cytosol
  • PMID:17317660 (2007): plasma membrane
  • PMID:15734919 (2005): cytosol cytosolic ribosomes
  • PMID:15496452 (2005): nucleus
  • PMID:15028209 (2004): plastid
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : ribosomal protein S6
Curator
Summary (TAIR10)
Encodes a putative ribosomal protein S6 (rps6a). RPS6A and RPS6B are fully redundant and essential during gametogenesis.
Computational
Description (TAIR10)
ribosomal protein S6 (RPS6); FUNCTIONS IN: structural constituent of ribosome; INVOLVED IN: growth, translation; LOCATED IN: in 6 components; EXPRESSED IN: 29 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein S6e (InterPro:IPR001377), Ribosomal protein S6, eukaryotic (InterPro:IPR014401); BEST Arabidopsis thaliana protein match is: Ribosomal protein S6e (TAIR:AT5G10360.1); Has 1159 Blast hits to 1155 proteins in 426 species: Archae - 247; Bacteria - 0; Metazoa - 418; Fungi - 171; Plants - 143; Viruses - 0; Other Eukaryotes - 180 (source: NCBI BLink).
Protein Annotations
BioGrid:14584eggNOG:COG2125eggNOG:KOG1646EMBL:AF034217
EMBL:AL031004EMBL:AL161579EMBL:AY050803EMBL:AY113983
EMBL:BT000693EMBL:CP002687EnsemblPlants:AT4G31700EnsemblPlants:AT4G31700.1
entrez:829298ExpressionAtlas:O48549GeneID:829298Genevisible:O48549
GO:GO:0003735GO:GO:0005730GO:GO:0005829GO:GO:0005886
GO:GO:0006364GO:GO:0006412GO:GO:0009506GO:GO:0009507
GO:GO:0016020GO:GO:0022626GO:GO:0022627GO:GO:0042274
hmmpanther:PTHR11502hmmpanther:PTHR11502:SF10HOGENOM:HOG000190952InParanoid:O48549
IntAct:O48549InterPro:IPR001377InterPro:IPR014401iPTMnet:O48549
ncoils:CoilOMA:SARGCIVPANTHER:PTHR11502PaxDb:O48549
Pfam:O48549Pfam:PF01092PhylomeDB:O48549PIR:T05100
PIRSF:PIRSF002129PRIDE:O48549PRO:PR:O48549ProteinModelPortal:O48549
Proteomes:UP000006548Reactome:R-ATH-156827Reactome:R-ATH-166208Reactome:R-ATH-1799339
Reactome:R-ATH-72689Reactome:R-ATH-72695Reactome:R-ATH-72702Reactome:R-ATH-72706
Reactome:R-ATH-975956Reactome:R-ATH-975957RefSeq:NP_194898.1SMART:SM01405
SMR:O48549STRING:3702.AT4G31700.1TAIR:AT4G31700tair10-symbols:RPS6
tair10-symbols:RPS6AUniGene:At.22261UniProt:O48549
Coordinates (TAIR10) chr4:-:15346306..15347714
Molecular Weight (calculated) 28368.70 Da
IEP (calculated) 11.31
GRAVY (calculated) -0.90
Length 250 amino acids
Sequence (TAIR10)
(BLAST)
001: MKFNVANPTT GCQKKLEIDD DQKLRAFYDK RISQEVSGDA LGEEFKGYVF KIKGGCDKQG FPMKQGVLTP GRVRLLLHRG TPCFRGHGRR TGERRRKSVR
101: GCIVSPDLSV LNLVIVKKGE NDLPGLTDTE KPRMRGPKRA SKIRKLFNLK KEDDVRTYVN TYRRKFTNKK GKEVSKAPKI QRLVTPLTLQ RKRARIADKK
201: KKIAKANSDA ADYQKLLASR LKEQRDRRSE SLAKKRSRLS SAAAKPSVTA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)