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AT4G31615.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Transcriptional factor B3 family protein; FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: shoot apex, embryo, leaf whorl, flower, seed; EXPRESSED DURING: F mature embryo stage, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31620.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JX38eggNOG:ENOG41104C4EMBL:AB493713EMBL:AL031004
EMBL:AL161579EMBL:CP002687EnsemblPlants:AT4G31615EnsemblPlants:AT4G31615.1
entrez:829289Gene3D:2.40.330.10GeneID:829289Genevisible:Q3E9T2
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355
hmmpanther:PTHR31674hmmpanther:PTHR31674:SF5HOGENOM:HOG000154088InParanoid:Q3E9T2
InterPro:IPR003340InterPro:IPR015300iPTMnet:Q3E9T2KEGG:ath:AT4G31615
OMA:ERCCEIDPaxDb:Q3E9T2Pfam:PF02362Pfam:Q3E9T2
Pfscan:PS50863PhylomeDB:Q3E9T2PIR:T05108PRIDE:Q3E9T2
PRO:PR:Q3E9T2PROSITE:PS50863ProteinModelPortal:Q3E9T2Proteomes:UP000006548
RefSeq:NP_680753.2SMART:SM01019SUPFAM:SSF101936TAIR:AT4G31615
UniGene:At.31732UniProt:Q3E9T2
Coordinates (TAIR10) chr4:-:15320297..15322194
Molecular Weight (calculated) 55039.00 Da
IEP (calculated) 8.85
GRAVY (calculated) -0.67
Length 487 amino acids
Sequence (TAIR10)
(BLAST)
001: MDDPAISSPT NKHFFVIVLH GHKSSPMIPA EFFSTYVEGK NHQSTKLKLT SDAFDRTWEV KLNGRRFAGG WENFSTVHSL QDDDVVIFRE IGDMTFHVTA
101: SGRSFCKLQY ISSDEDRADE DDAWNVYSDS KNIVSKKKPR TEAESSSKNY YLVAHVTPSN LSRDRLYLIK AFARSNGLNE RCCEIDLMNK HGKSWTLGLR
201: YSTVNDQASI SGGWRDFCLV NGLEAGSFYR FKLVQNGERP LLRLCYDTIP EEDCYKGNRK VNLSESASMK QGKFLTMTFK PYMLKSGQLR LSRPFAIENE
301: IKEAEDITLV DKNGGNWPSY VASGDGQGGK YYLAKGWRSF CAANRLKTGE TFTLEFVRGE GTTPMLKFCS KSKDKIEQVP FDEGGETQEE TETRVKKRAR
401: VSAERGSSRR NQASNKPNAD PQNLQPGQPH CSISDQVQKV KQIIVDTLTG IKRIRSELER KGQKLEASIL EIDALGEKVS EINKILK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)