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AT4G31610.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 1.000
ASURE: nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Transcriptional factor B3 family protein
Curator
Summary (TAIR10)
Expressed specifically in reproductive meristems, member of a moderately sized gene family distantly related to known plant DNA binding proteins
Computational
Description (TAIR10)
REPRODUCTIVE MERISTEM 1 (REM1); FUNCTIONS IN: DNA binding, sequence-specific DNA binding transcription factor activity; INVOLVED IN: regulation of transcription, DNA-dependent; LOCATED IN: cellular_component unknown; EXPRESSED IN: 8 plant structures; EXPRESSED DURING: 6 growth stages; CONTAINS InterPro DOMAIN/s: Transcriptional factor B3 (InterPro:IPR003340); BEST Arabidopsis thaliana protein match is: Transcriptional factor B3 family protein (TAIR:AT4G31630.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410JT9CeggNOG:ENOG411082EEMBL:AF336344EMBL:AL031004EMBL:AL161579EMBL:BT003891EMBL:BT005002
EMBL:CP002687EnsemblPlants:AT4G31610EnsemblPlants:AT4G31610.1entrez:829288Gene3D:2.40.330.10GeneID:829288Genevisible:Q84J39
GO:GO:0003677GO:GO:0005634GO:GO:0006351GO:GO:0006355GO:GO:0009908Gramene:AT4G31610.1hmmpanther:PTHR31674
hmmpanther:PTHR31674:SF5HOGENOM:HOG000154088InParanoid:Q84J39InterPro:IPR003340InterPro:IPR015300KEGG:ath:AT4G31610OMA:ERIWGIS
PaxDb:Q84J39Pfam:PF02362Pfam:Q84J39Pfscan:PS50863PhylomeDB:Q84J39PIR:T05109PRO:PR:Q84J39
PROSITE:PS50863ProteinModelPortal:Q84J39Proteomes:UP000006548RefSeq:NP_567880.1SMART:SM01019STRING:3702.AT4G31610.1SUPFAM:SSF101936
TAIR:AT4G31610tair10-symbols:ATREM1tair10-symbols:REM1UniGene:At.19035UniProt:Q84J39
Coordinates (TAIR10) chr4:+:15317700..15319776
Molecular Weight (calculated) 58391.20 Da
IEP (calculated) 5.44
GRAVY (calculated) -0.69
Length 517 amino acids
Sequence (TAIR10)
(BLAST)
001: MADPPHFSLF QQKFRTGDKP FLTLDADFLM NHTKVLLKSD ASDKVWKVKL DGGRLSEGWE EFACDQKFRD GDVLVFKHHG DEVFHVAVVS PSVSGDIRNA
101: SSSQVITEDT YIDVDDVDDD DYGQDDEDDD DDDDEGEDNI ENISEKTDKR QEADSSSDHS GFITARVTRY SLLHDRLDLS RNFTLLFGGH QKTCEIDVVD
201: EQGRRWTMKL AKNISSGVFY IRLGWGNFCC ANGLTQGDLC KFKLFQNEER PVLWLCPQES GNGRKEKRTF DEVSKGKEKK TPSPFLIVKY TPSRETTGQL
301: SLPVSFTRNN SINKTGEVIL LNQDGRKWSS YLQITGLGRG AGSEWFYLRR GWREMCEANG VGVNDSFKLE LVWEGANPMF KFCSKIENHE YKGKGNQRTR
401: KKRACETAPQ PRNVKKTPRL GVEGPVYQVD EERGHTQVSN RTNTISGNLQ RLLPPSCSVS DQVANVKQGI VDSLNTVRQC RTELETSEQN LQASLLAIDA
501: LGERIWGISK ILSSNLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)