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AT4G31530.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plastid 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : NAD(P)-binding Rossmann-fold superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
NAD(P)-binding Rossmann-fold superfamily protein; FUNCTIONS IN: binding, 3-beta-hydroxy-delta5-steroid dehydrogenase activity, catalytic activity; INVOLVED IN: steroid biosynthetic process, metabolic process; LOCATED IN: chloroplast stroma, chloroplast, chloroplast envelope; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: 3-beta hydroxysteroid dehydrogenase/isomerase (InterPro:IPR002225), NAD(P)-binding domain (InterPro:IPR016040); BEST Arabidopsis thaliana protein match is: NAD(P)-binding Rossmann-fold superfamily protein (TAIR:AT2G37660.1); Has 3753 Blast hits to 3674 proteins in 907 species: Archae - 33; Bacteria - 2527; Metazoa - 85; Fungi - 49; Plants - 490; Viruses - 0; Other Eukaryotes - 569 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0702eggNOG:KOG1203EMBL:AK117306EMBL:BT008347
EMBL:CP002687EnsemblPlants:AT4G31530EnsemblPlants:AT4G31530.1entrez:829280
ExpressionAtlas:Q8GYZ0Gene3D:3.40.50.720GeneID:829280Gramene:AT4G31530.1
hmmpanther:PTHR10366hmmpanther:PTHR10366:SF384InterPro:IPR016040Pfam:PF13460
PhylomeDB:Q8GYZ0Proteomes:UP000006548RefSeq:NP_194881.2SMR:Q8GYZ0
STRING:3702.AT4G31530.2SUPFAM:SSF51735TAIR:AT4G31530UniGene:At.31738
UniProt:Q8GYZ0
Coordinates (TAIR10) chr4:+:15282281..15284064
Molecular Weight (calculated) 35230.00 Da
IEP (calculated) 8.17
GRAVY (calculated) -0.17
Length 324 amino acids
Sequence (TAIR10)
(BLAST)
001: MATTTNLSFA PPSYSRFAAT KSQIRNPLFT SPLPLPSSFF LVRNEASLSS SITPVQAFTE EAVDTSDLAS SSSKLVLVVG GTGGVGQLVV ASLLKRNIRS
101: RLLLRDLDKA TKLFGKQDEY SLQVVKGDTR NAEDLDPSMF EGVTHVICTT GTTAFPSKRW NEENTPEKVD WEGVKNLISA LPSSVKRVVL VSSVGVTKSN
201: ELPWSIMNLF GVLKYKKMGE DFLRDSGLPF TIIRPGRLTD GPYTSYDLNT LLKATAGERR AVVIGQGDNL VGEVSRLVVA EACIQALDIE FTQGKAYEIN
301: SVKGDGPGSD PQQWRELFKA AESK
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)