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AT4G31490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
golgi 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:25900983 (2015): Golgi
  • PMID:25900983 (2015): Golgi Golgi apparatus Golgi membrane
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Coatomer, beta subunit
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Coatomer, beta subunit; FUNCTIONS IN: clathrin binding, structural molecule activity, binding; INVOLVED IN: intracellular protein transport, vesicle-mediated transport; LOCATED IN: membrane; EXPRESSED IN: guard cell, leaf; CONTAINS InterPro DOMAIN/s: Coatomer, beta subunit, C-terminal (InterPro:IPR011710), Armadillo-like helical (InterPro:IPR011989), Coatomer, beta subunit (InterPro:IPR016460), Armadillo-type fold (InterPro:IPR016024), Clathrin/coatomer adaptor, adaptin-like, N-terminal (InterPro:IPR002553); BEST Arabidopsis thaliana protein match is: Coatomer, beta subunit (TAIR:AT4G31480.2); Has 2805 Blast hits to 2731 proteins in 309 species: Archae - 0; Bacteria - 0; Metazoa - 1207; Fungi - 640; Plants - 392; Viruses - 0; Other Eukaryotes - 566 (source: NCBI BLink).
Protein Annotations
eggNOG:COG5096eggNOG:KOG1058EMBL:AK228881EMBL:AL080283EMBL:AL161579EMBL:CP002687EnsemblPlants:AT4G31490
EnsemblPlants:AT4G31490.1entrez:829276Gene3D:1.25.10.10GeneID:829276Genevisible:Q9SV20GO:GO:0005198GO:GO:0005829
GO:GO:0006886GO:GO:0016020GO:GO:0016192GO:GO:0030126Gramene:AT4G31490.1hmmpanther:PTHR10635HOGENOM:HOG000207417
InParanoid:Q9SV20IntAct:Q9SV20InterPro:IPR002553InterPro:IPR011710InterPro:IPR011989InterPro:IPR016024InterPro:IPR016460
InterPro:IPR029446iPTMnet:Q9SV20KEGG:ath:AT4G31490OMA:SGFCGFMPANTHER:PTHR10635PaxDb:Q9SV20Pfam:PF01602
Pfam:PF07718Pfam:PF14806Pfam:Q9SV20PhylomeDB:Q9SV20PIR:T10679PIRSF:PIRSF005727PRIDE:Q9SV20
PRO:PR:Q9SV20ProteinModelPortal:Q9SV20Proteomes:UP000006548Reactome:R-ATH-199997Reactome:R-ATH-6807878RefSeq:NP_194877.2SMR:Q9SV20
STRING:3702.AT4G31490.1SUPFAM:SSF48371TAIR:AT4G31490UniGene:At.47266UniProt:Q9SV20
Coordinates (TAIR10) chr4:+:15269460..15272693
Molecular Weight (calculated) 106084.00 Da
IEP (calculated) 5.87
GRAVY (calculated) -0.02
Length 948 amino acids
Sequence (TAIR10)
(BLAST)
001: MDKSSTMLVH YDKGTPAVAN EIKEALEGND VEAKVDAMKK AIMLLLNGET IPQLFITIIR YVLPSEDHTI QKLLLLYLEL IEKTDSKGKV LPEMILICQN
101: LRNNLQHPNE YIRGVTLRFL CRMKETEIVE PLTPSVLQNL EHRHPFVRRN AILAIMSIYK LPHGDQLFVD APEMIEKVLS TEQDPSAKRN AFLMLFTCAE
201: ERAVNYLLSN VDKVSDWNES LQMVVLELIR SVCKTKPAEK GKYIKIIISL LSATSSAVIY ECAGTLVSLS SAPTAIRAAA NTYCQLLLSQ SDNNVKLILL
301: DRLYELKTLH RDIMVELIID VLRALSSPNL DIRRKTLDIA LDLITHHNIN EVVQMLKKEV VKTQSGELEK NGEYRQMLIQ AIHACAVKFP EVASTVVHLL
401: MDFLGDSNVA SALDVVVFVR EIIETNPKLR VSIITRLLDT FYQIRAGKVC PCALWIIGEY CLSLSEVESG ISTITQCLGE LPFYSVSEES EPTETSKKIQ
501: PTSSAMVSSR KPVILADGTY ATQSAASETT FSSPTVVQGS LTSGNLRALL LTGDFFLGAV VACTLTKLVL RLEEVQSSKT EVNKTVSQAL LIMVSILQLG
601: QSPVSPHPID NDSYERIMLC IKLLCHRNVE MKKIWLESCR QSFVKMISEK QLREMEELKA KTQTTHAQPD DLIDFFHLKS RKGMSQLELE DQVQDDLKRA
701: TGEFTKDEND ANKLNRILQL TGFSDPVYAE AYVTVHHYDI ALEVTVINRT KETLQNLCLE LATMGDLKLV ERPQNYSLAP ERSMQIKANI KVSSTETGVI
801: FGNIVYETSN VMERNVVVLN DIHIDIMDYI SPAVCSEVAF RTMWAEFEWE NKVAVNTTIQ NEREFLDHII KSTNMKCLTA PSAIAGECGF LAANLYAKSV
901: FGEDALVNLS IEKQTDGTLS GYIRIRSKTQ GIALSLGDKI TLKQKGGS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)