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AT4G31300.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.500
nucleus 0.500
ASURE: cytosol,nucleus
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:27177187 (2016): nucleus
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:24872594 (2014): plastid
  • PMID:21166475 (2011): cytosol
  • PMID:19334764 (2009): plasma membrane
  • PMID:17151019 (2007): plant-type vacuole
  • PMID:15215502 (2004): plant-type vacuole
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein
Curator
Summary (TAIR10)
Encodes 20S proteasome subunit PBA1 (PBA1).
Computational
Description (TAIR10)
PBA1; FUNCTIONS IN: peptidase activity, endopeptidase activity, threonine-type endopeptidase activity; INVOLVED IN: response to zinc ion, response to salt stress, ubiquitin-dependent protein catabolic process; LOCATED IN: proteasome core complex, proteasome complex, plasma membrane, vacuole; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Proteasome, beta-type subunit, conserved site (InterPro:IPR016050), Peptidase T1A, proteasome beta-subunit (InterPro:IPR000243), Proteasome, subunit alpha/beta (InterPro:IPR001353); BEST Arabidopsis thaliana protein match is: 20S proteasome beta subunit PBB2 (TAIR:AT5G40580.2); Has 6974 Blast hits to 6974 proteins in 614 species: Archae - 864; Bacteria - 513; Metazoa - 2325; Fungi - 1590; Plants - 711; Viruses - 0; Other Eukaryotes - 971 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G31300-MONOMERBioCyc:ARA:GQT-2435-MONOMERBioCyc:ARA:GQT-2436-MONOMERBioGrid:14543EC:3.4.25.1eggNOG:ENOG410XS23eggNOG:KOG0174
EMBL:AF043529EMBL:AL021633EMBL:AL161578EMBL:AY052354EMBL:AY058240EMBL:AY086241EMBL:CP002687
EMBL:Y13694EnsemblPlants:AT4G31300EnsemblPlants:AT4G31300.1EnsemblPlants:AT4G31300.3entrez:829257ExpressionAtlas:Q8LD27Gene3D:3.60.20.10
GeneID:829257Genevisible:Q8LD27GO:GO:0004298GO:GO:0005634GO:GO:0005737GO:GO:0005839GO:GO:0051603
hmmpanther:PTHR11599hmmpanther:PTHR11599:SF4HOGENOM:HOG000091079InParanoid:Q8LD27IntAct:Q8LD27InterPro:IPR000243InterPro:IPR001353
InterPro:IPR016050InterPro:IPR023333InterPro:IPR029055MEROPS:T01.010PaxDb:Q8LD27Pfam:PF00227Pfam:Q8LD27
Pfscan:PS51476PhylomeDB:Q8LD27PIR:T04497PRIDE:Q8LD27PRINTS:PR00141PRO:PR:Q8LD27PROSITE:PS00854
PROSITE:PS51476ProteinModelPortal:Q8LD27Proteomes:UP000006548Reactome:R-ATH-1236978Reactome:R-ATH-174184Reactome:R-ATH-349425Reactome:R-ATH-5632684
Reactome:R-ATH-68949Reactome:R-ATH-69017Reactome:R-ATH-983168RefSeq:NP_001190879.1RefSeq:NP_194858.1scanprosite:PS00854SMR:Q8LD27
STRING:3702.AT4G31300.2SUPFAM:SSF56235TAIR:AT4G31300tair10-symbols:PBA1UniGene:At.24496UniProt:Q8LD27
Coordinates (TAIR10) chr4:+:15188927..15190935
Molecular Weight (calculated) 25152.90 Da
IEP (calculated) 5.24
GRAVY (calculated) -0.13
Length 233 amino acids
Sequence (TAIR10)
(BLAST)
001: MDLNLDAPHS MGTTIIGVTY NGGVVLGADS RTSTGMYVAN RASDKITQLT DNVYVCRSGS AADSQVVSDY VRYFLHQHTI QHGQPATVKV SANLIRMLAY
101: NNKNMLQTGL IVGGWDKYEG GKIYGIPLGG TVVEQPFAIG GSGSSYLYGF FDQAWKDNMT KEEAEQLVVK AVSLAIARDG ASGGVVRTVI INSEGVTRNF
201: YPGDKLQLWH EELEPQNSLL DILNAAGPEP MAM
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)