suba logo
AT4G31290.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

.
SUBAcon:
endoplasmic reticulum 0.896
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ChaC-like family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
ChaC-like family protein; CONTAINS InterPro DOMAIN/s: ChaC-like protein (InterPro:IPR006840); BEST Arabidopsis thaliana protein match is: ChaC-like family protein (TAIR:AT5G26220.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG3703eggNOG:KOG3182EMBL:AK227743EMBL:BT006411
EMBL:CP002687EnsemblPlants:AT4G31290EnsemblPlants:AT4G31290.1entrez:829256
Gene3D:3.10.490.10GeneID:829256Gramene:AT4G31290.1hmmpanther:PTHR12192
hmmpanther:PTHR12192:SF10HOGENOM:HOG000264264InterPro:IPR006840InterPro:IPR013024
KEGG:ath:AT4G31290OMA:HSWVHRGPANTHER:PTHR12192Pfam:PF04752
PhylomeDB:Q84MC1Proteomes:UP000006548Reactome:R-ATH-174403RefSeq:NP_567871.1
STRING:3702.AT4G31290.1TAIR:AT4G31290UniGene:At.47478UniProt:Q84MC1
Coordinates (TAIR10) chr4:+:15186851..15188278
Molecular Weight (calculated) 25608.50 Da
IEP (calculated) 6.51
GRAVY (calculated) -0.43
Length 227 amino acids
Sequence (TAIR10)
(BLAST)
001: MVMWVFGYGS LVWNPGFHYD EKVLGFIKGY KRVFDLACID HRGTPEHPAR TCTLEKAEEA ICWGTAFCVR GGPEKERLAM EYLERRECEY DLKTSVDFYK
101: EDDPLKPAVT GVIVFTSTPD KVSNKYYLGP APLEDMARQI ATANGPCGNN RDYLFLLEKA MHDIGHEEDY VIELANEVRK VLAESSTKKV TPVKESRASR
201: VANKSKNNVP TAHQILPHHP EAVATTI
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)