AT4G31210.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : DNA topoisomerase, type IA, core | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
DNA topoisomerase, type IA, core; FUNCTIONS IN: DNA topoisomerase activity, DNA topoisomerase type I activity, DNA binding, nucleic acid binding; INVOLVED IN: DNA topological change, DNA unwinding involved in replication, DNA metabolic process; LOCATED IN: chromosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: DNA topoisomerase, type IA, zn finger (InterPro:IPR013498), DNA topoisomerase, type IA, core (InterPro:IPR000380), DNA topoisomerase, type IA, DNA-binding (InterPro:IPR003602), DNA topoisomerase, type IA, domain 2 (InterPro:IPR003601), DNA topoisomerase, type IA, central (InterPro:IPR013497), DNA topoisomerase, type IA, central region, subdomain 3 (InterPro:IPR013826), DNA topoisomerase I, bacterial-type (InterPro:IPR005733), Toprim domain, subgroup (InterPro:IPR006154), DNA topoisomerase, type IA, central region, subdomain 1 (InterPro:IPR013824), Toprim domain (InterPro:IPR006171); BEST Arabidopsis thaliana protein match is: topoisomerase 3alpha (TAIR:AT5G63920.1); Has 21441 Blast hits to 18441 proteins in 2923 species: Archae - 440; Bacteria - 10015; Metazoa - 1777; Fungi - 750; Plants - 256; Viruses - 35; Other Eukaryotes - 8168 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15165280..15172534 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 141571.00 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 9.90 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.56 | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 1284 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
0001: MQRTISLAAA KSSSSTSVLS LHPLMAKLQC RAIQNFPASS SSSVVRVDRV YRNVSQLQFK RENSSCLKLA CALPSHLSLL GSLSYATHWS SSTSRAFGYS 0101: FRPFARRYFS QVASTEIKDS IVGGVEKFGG NKIGFKKFNK KWKKHRVLAS TKAEVVASTE PVIGDVNSGI KAKLSTAASP ASNAKQASTV KTKRQPKSKK 0201: FEDKSSPTVS VLETVSVDES LQSFPKPRHS GSGNRKSSSA EYSSQKEVVK KTNVEGPKSS TPSNSMSEQQ HWTSTKASNA PKQEQDNIVG GDEKAGGNKV 0301: GFKKFNKNRK KHNVLASSEA EVVTSTEPVI GDGSSGIKAE LSTAASPASN GNQATTVKSK RRPKNKKVED KSSSVVPVLE AVSLDESPIS VPKPKHSGSG 0401: NRKSSSAKKE VAKNHPVEEP KSPAPSNSKS EQQHLKSTKA SKAPKQKLVP QHMKNSIEHR GQNASKPLYP PSGKSVIVVE SMTKAKIIQG YLGDMYEVLP 0501: SYGHIRDLAT RSGSVRPDDD FSMVWEVPSS AWTHIKSIKV ALNGAENLIL ASDPDREGEA IAWHIIEMLQ QQGALHESMT VARVVFHEIT ESAIKSALQS 0601: PREIDGDLVH AYLARRALDY LIGFNISPLL WRKLPGCPSA GRVQSAALAL VCDRESEIDG FKPQEYWTVG IKVKGKDNSA TFSAHLTSLN SKRLNQLSIS 0701: SEANAQDIEQ RIKSEGFLVK GTKTSTTRKN PPTPYITSTL QQDAANKLHF STAHTMKLAQ KLYEGVQLSD GKSAGLITYM RTDGLHIADE AIKDIQSLVA 0801: ERYGKNFTSD SPRKYFKKVK NAQEAHEAIR PTDIRRLPST IASLLDADSL KLYTLIWSRA VACQMEPASI AQIQLDIGNA SESIIFRSSC SKVEFLGYQA 0901: VYEDPEAKAI KNNDNDQSSE REETFKTLSS LKDGDLLQIG EVELKQHHTQ HPPRYSEGSL VKKLEELGIG RPSTYASIFR VLQHRKYVTI KNRVLYPEFR 1001: ARMVSAFLTH YFTEITDYSF TADMETELDN VSGGVTEWKG LLRDYWTRFS AYCKRVENVQ RSQVEKMLEK KYEDVLFSLL PYPSRTCPSC MEGTLSFKAS 1101: KFGAGYFIGC DQHPSCKFIA KTLYGEDEDE DDPPKNNCVE EPKLLGLHPN TSEKVILKCG PYGHYVQLGE DKKGHTPKRA NAAHIKDVNS ITLESALELL 1201: RYPLTLGTHP EDGQPVVLKL SKSGFTIKHR RNMATVPKNT EPGEVTLERA MKLLSGKNVR KSGRPPKSIL PEEEKGDEEV VVAI |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)