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AT4G31140.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Predictors External Curations
AmiGO : plasma membrane 12805588
AmiGO : plasma membrane 16618929
AmiGO : plasma membrane 17317660
AmiGO : plasma membrane 17644812
AmiGO : vacuole 15215502
SwissProt : plasma membrane 16381842
TAIR : plasma membrane 17317660
TAIR : plasma membrane 12805588
TAIR : plasma membrane 16618929
TAIR : vacuole 15215502
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28155257 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26748395 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25641898 (2015): plasma membrane
  • PMID:23990937 (2013): plasma membrane
  • PMID:23903016 (2013): plant-type vacuole plant-type vacuole membrane
  • PMID:22318864 (2012): plasma membrane
  • PMID:22215637 (2012): plasma membrane
  • PMID:20843791 (2010): plasma membrane
  • PMID:17644812 (2007): plasma membrane
  • PMID:17317660 (2007): plasma membrane
  • PMID:16618929 (2006): plasma membrane
  • PMID:16602701 (2006): plasma membrane
  • PMID:16356755 (2006): extracellular region
  • PMID:15215502 (2004): plant-type vacuole
  • PMID:14517339 (2003): plasma membrane
  • PMID:12805588 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : O-Glycosyl hydrolases family 17 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
O-Glycosyl hydrolases family 17 protein; FUNCTIONS IN: cation binding, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity; INVOLVED IN: carbohydrate metabolic process; LOCATED IN: anchored to plasma membrane, plasma membrane, vacuole, anchored to membrane, plant-type cell wall; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 12 growth stages; CONTAINS InterPro DOMAIN/s: X8 (InterPro:IPR012946), Glycoside hydrolase, catalytic core (InterPro:IPR017853), Glycoside hydrolase, family 17 (InterPro:IPR000490), Glycoside hydrolase, subgroup, catalytic core (InterPro:IPR013781); BEST Arabidopsis thaliana protein match is: O-Glycosyl hydrolases family 17 protein (TAIR:AT5G58090.1); Has 2782 Blast hits to 2712 proteins in 151 species: Archae - 0; Bacteria - 6; Metazoa - 4; Fungi - 39; Plants - 2723; Viruses - 0; Other Eukaryotes - 10 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G31140-MONOMERCAZy:CBM43CAZy:GH17EC:3.2.1.39eggNOG:ENOG410IEQNeggNOG:ENOG410YE7XEMBL:AK229398
EMBL:AL161578EMBL:CP002687EnsemblPlants:AT4G31140EnsemblPlants:AT4G31140.1entrez:829242Gene3D:3.20.20.80GeneID:829242
Genevisible:Q9M088GO:GO:0005773GO:GO:0005886GO:GO:0005975GO:GO:0006952GO:GO:0009505GO:GO:0009506
GO:GO:0031225GO:GO:0042973GO:GO:0046658Gramene:AT4G31140.1hmmpanther:PTHR32227hmmpanther:PTHR32227:SF20HOGENOM:HOG000238221
InParanoid:Q9M088InterPro:IPR000490InterPro:IPR012946InterPro:IPR013781InterPro:IPR017853KEGG:ath:AT4G31140KO:K19893
OMA:ETFNGTYPaxDb:Q9M088Pfam:PF00332Pfam:PF07983Pfam:Q9M088PhylomeDB:Q9M088PIR:T10668
PRIDE:Q9M088PRO:PR:Q9M088PROSITE:PS00587ProteinModelPortal:Q9M088Proteomes:UP000006548RefSeq:NP_194843.1scanprosite:PS00587
SMART:SM00768SMR:Q9M088SUPFAM:SSF51445TAIR:AT4G31140TMHMM:TMhelixUniGene:At.31769UniProt:Q9M088
Coordinates (TAIR10) chr4:+:15141581..15143188
Molecular Weight (calculated) 52718.20 Da
IEP (calculated) 6.05
GRAVY (calculated) 0.06
Length 484 amino acids
Sequence (TAIR10)
(BLAST)
001: MLFKGVFAVF FVITLLYASL LIEVEGIGVN WGSQARHPLP PATVVRLLRE NGIQKVKLFE ADSAILKALS RTGIQVMVGI PNDLLAPLAG SVAAAERWVS
101: QNVSAHVSSN GVDIRYVAVG NEPFLKAFNG TFEGITLPAL QNIQSAIIKA GLATQVKVTV PLNADVYQSA SNLPSDGDFR PEIRDLMLNI VKFLSDNGAP
201: FTINIYPFIS LYNDPNFPVE FAFFDGTGTP INDNGRIYDN VLDANYDTLV WSLQKNGFGN LTIIVGEVGW PTDGDKNANL MYARRYNQGF MNRQKANKGT
301: PMRPGAMDAY LFGLIDEDAK SIQPGNFERH WGIFYIDGQP KYQLSLGSGN GLIPAKDVHY LAKKWCILAP NANLQDPQLG PSVSYACDHA DCTSLGYGSS
401: CGNLNLAQNV SYAFNSYYQV SNQLDSACKF PGLSIVSTRD PSVGSCKFKI MIKSEDASEA SAMMPITRST AVLLLLSICL YIVL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)