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AT4G31130.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 1.000
What is SUBAcon?
Predictors External Curations
AdaBoost: plasma membraneBaCelLo: endoplasmic reticulumBaCelLo: extracellularBaCelLo: golgi
iPSORT: endoplasmic reticulumiPSORT: extracellulariPSORT: golgiMultiLoc: endoplasmic reticulum
PCLR: plastidPlant-mPloc: peroxisomePlant-mPloc: plasma membranePlant-mPloc: plastid
Predotar: endoplasmic reticulumPredotar: extracellularPredotar: golgiPredSL: endoplasmic reticulum
PredSL: extracellularPredSL: golgiPProwler: endoplasmic reticulumPProwler: extracellular
PProwler: golgiSLPFA: endoplasmic reticulumSLPFA: extracellularSLPFA: golgi
SLP-Local: endoplasmic reticulumSLP-Local: extracellularSLP-Local: golgiSubLoc: extracellular
TargetP: endoplasmic reticulumTargetP: extracellularTargetP: golgiWoLF PSORT: plastid
YLoc: extracellular
 AmiGO : plasma membrane 14506206
TAIR : plasma membrane 14506206
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:22318864 (2012): plasma membrane
  • PMID:21988472 (2012): plant-type vacuole plant-type vacuole membrane
  • PMID:17869214 (2007): plasma membrane
  • PMID:15308754 (2004): plasma membrane
  • PMID:14506206 (2003): plasma membrane
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Protein of unknown function (DUF1218)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)		 Protein of unknown function (DUF1218); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: plasma membrane; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1218 (InterPro:IPR009606); Has 77 Blast hits to 70 proteins in 13 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 77; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410IWBYeggNOG:ENOG410YI60EMBL:AL161578EMBL:BT004774
EMBL:CP002687EnsemblPlants:AT4G31130EnsemblPlants:AT4G31130.1entrez:829241
GeneID:829241GO:GO:0005886GO:GO:0016021Gramene:AT4G31130.1
hmmpanther:PTHR31769hmmpanther:PTHR31769:SF9HOGENOM:HOG000241486IntAct:Q9M089
InterPro:IPR009606KEGG:ath:AT4G31130OMA:DDNKGEYPfam:PF06749
PhylomeDB:Q9M089PIR:T10667Proteomes:UP000006548RefSeq:NP_194842.1
TAIR:AT4G31130TMHMM:TMhelixUniGene:At.43091UniProt:Q9M089
Coordinates (TAIR10) chr4:-:15137159..15138465
Molecular Weight (calculated) 20754.30 Da
IEP (calculated) 8.32
GRAVY (calculated) 0.43
Length 195 amino acids
Sequence (TAIR10)
(BLAST) 		001: MAVSMKQMSL VVSALGVLSF VLGVIAENKK PASGTPISGK GVVICKYPSD PTVALGYLSA AFLLACTVAG YKSLFISYKG KSVPNSVLFK STSFSVFFNI
101: ALITSGLALS LLLWPTITEQ LHLTRNVHRN LETSCPTAKT GLLGGGAFVS LDSCLFWLVA LMLADNARED HFDEVESRSI DGNSSSRDVN LKIDA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)