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AT4G31050.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Biotin/lipoate A/B protein ligase family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Biotin/lipoate A/B protein ligase family; FUNCTIONS IN: lipoyltransferase activity, octanoyltransferase activity, catalytic activity; INVOLVED IN: protein modification process, lipoate biosynthetic process; LOCATED IN: cytoplasm; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Octanoyltransferase, conserved site (InterPro:IPR020605), Octanoyltransferase (InterPro:IPR000544), Biotin/lipoate A/B protein ligase (InterPro:IPR004143); BEST Arabidopsis thaliana protein match is: Biotin/lipoate A/B protein ligase family (TAIR:AT1G47578.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G31050-MONOMEREC:2.3.1.-eggNOG:COG0321eggNOG:KOG0325EMBL:AB072390EMBL:AK221489EMBL:AL022198
EMBL:AL161578EMBL:BT024910EMBL:CP002687EnsemblPlants:AT4G31050EnsemblPlants:AT4G31050.1entrez:829232GeneID:829232
Genevisible:Q948J9GO:GO:0009107GO:GO:0009249GO:GO:0009507GO:GO:0016415Gramene:AT4G31050.1HAMAP:MF_00013
hmmpanther:PTHR10993hmmpanther:PTHR10993:SF11HOGENOM:HOG000194322InParanoid:Q948J9InterPro:IPR000544InterPro:IPR004143InterPro:IPR020605
KEGG:00785+2.3.1.181KEGG:ath:AT4G31050KO:K03801OMA:PVYTMGTPaxDb:Q948J9Pfam:PF03099Pfam:Q948J9
Pfscan:PS51733PhylomeDB:Q948J9PIR:G85363PRIDE:Q948J9PRO:PR:Q948J9PROSITE:PS01313PROSITE:PS51733
ProteinModelPortal:Q948J9Proteomes:UP000006548RefSeq:NP_567866.1scanprosite:PS01313SMR:Q948J9STRING:3702.AT4G31050.1SUPFAM:SSF55681
TAIR:AT4G31050TIGRfam:TIGR00214TIGRFAMs:TIGR00214UniGene:At.26334UniPathway:UPA00538UniProt:Q948J9
Coordinates (TAIR10) chr4:+:15114345..15115443
Molecular Weight (calculated) 31860.50 Da
IEP (calculated) 7.39
GRAVY (calculated) -0.24
Length 278 amino acids
Sequence (TAIR10)
(BLAST)
001: MELLNGVETL VSGIHHHHRT NAKRNRLVRS VKILNSGNHE IPRKCLCFDL YDKLVPYKKA WSWQKSIVEE KKTLIDRNQD CADTVILLQH SPVYTMGTAS
101: TEDYLNFDIK DAPFNVYRTE RGGEVTYHGP GQLVMYPIIN LRNHEMDLHW YLRMLEEIVI RVLSSTFSIK ASRLDGLTGV WVGNQKVAAI GIRVSKWITY
201: HGLALNVTTD LTPFNWIVPC GIRDRKVGNI KGLLEDGEHG MVDDLRLIDI VHESLLKEFS EAFQLQIEKQ TVSDPNIL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)