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AT4G30996.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
endoplasmic reticulum 0.997
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:21227472 (2011): endoplasmic reticulum
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Protein of unknown function (DUF1068)
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Protein of unknown function (DUF1068); FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1068 (InterPro:IPR010471); BEST Arabidopsis thaliana protein match is: Protein of unknown function (DUF1068) (TAIR:AT2G24290.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XSREeggNOG:KOG1823EMBL:AY045923EMBL:AY114012EMBL:CP002687EnsemblPlants:AT4G30996EnsemblPlants:AT4G30996.1
entrez:829226GeneID:829226GO:GO:0005768GO:GO:0005783GO:GO:0005794GO:GO:0005802GO:GO:0016021
GO:GO:0042538GO:GO:0043182Gramene:AT4G30996.1hmmpanther:PTHR32254hmmpanther:PTHR32254:SF4HOGENOM:HOG000240455InterPro:IPR010471
KEGG:ath:AT4G30996ncoils:CoilOMA:CIATTETPfam:PF06364PhylomeDB:Q94AM8Proteomes:UP000006548RefSeq:NP_567864.1
STRING:3702.AT4G30996.1SwissPalm:Q94AM8TAIR:AT4G30996TMHMM:TMhelixUniGene:At.2151UniProt:Q94AM8
Coordinates (TAIR10) chr4:+:15101464..15102461
Molecular Weight (calculated) 19116.00 Da
IEP (calculated) 5.38
GRAVY (calculated) -0.27
Length 172 amino acids
Sequence (TAIR10)
(BLAST)
001: MPRRSGDCMR CLVIFAVVSA LVVCGPALYW KFNKGFVGST RANSLCPPCV CDCPPPLSLL QIAPGLANLS ITDCGSDDPE LKQEMEKQFV DLLTEELKLQ
101: EAVADEHSRH MNVTLAEAKR VASQYQKEAE KCNAATEICE SARERAEALL IKERKITSLW EKRARQSGWE GE
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)