AT4G30940.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:cytosol 0.973 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : BTB/POZ domain with WD40/YVTN repeat-like protein | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
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| Computational Description (TAIR10) |
BTB/POZ domain with WD40/YVTN repeat-like protein; FUNCTIONS IN: voltage-gated potassium channel activity; INVOLVED IN: potassium ion transport; LOCATED IN: voltage-gated potassium channel complex, membrane; EXPRESSED IN: leaf whorl, male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; CONTAINS InterPro DOMAIN/s: WD40 repeat-like-containing domain (InterPro:IPR011046), BTB/POZ fold (InterPro:IPR011333), Potassium channel, voltage dependent, Kv, tetramerisation (InterPro:IPR003131), BTB/POZ-like (InterPro:IPR000210); BEST Arabidopsis thaliana protein match is: BTB/POZ domain with WD40/YVTN repeat-like protein (TAIR:AT2G24240.1); Has 1166 Blast hits to 1152 proteins in 112 species: Archae - 0; Bacteria - 4; Metazoa - 915; Fungi - 4; Plants - 126; Viruses - 0; Other Eukaryotes - 117 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:+:15055149..15056474 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 49054.90 Da | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 4.91 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.24 | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Length | 441 amino acids | ||||||||||||||||||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MGLSNDRIKF NVGGRIFETT ATTLANAGRD SFFGALFDEN WNLSQPGDLF IDRNPDCFAV LLDLLRTGDL NIPPNIPERL LHKEAMFYGL IDHLRTAKWG 101: PFDGNRLHLS RSVTGIAPGD GTAIRAGPDG GCCIAHGSVV HVFDWMLEEH PTINLDYQRV NDVGWIDSGN IVLSACERLG RGDGGMGLFS SSSGELRYKF 201: QVSHDNQVKS YSAGALSFSP DSKIFTSCKG RSNEYGIGVW DQSTGKQVDF FYESPGWSLG DADKLQWLSG KNCLLVATLF PRKDNCYISL LDFREKNMVW 301: SWSDIGFLTM AEEKRVRDAI AMEESNSICV VNEFEDLGFI DLRMDGGGSS VRWSSRSRLM KSKMPDEPCY PKLALHEGQL FSSMNDSISV FCGSDWVLTS 401: RLKRSYGGSI CDFSIGGDRL FALHSEENVF DVWETLPPPI I |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)