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AT4G30930.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
mitochondrion 1.000
ASURE: mitochondrion
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Ribosomal protein L21
Curator
Summary (TAIR10)
Encodes a ribosomal RPL21M protein that is localized to the mitochondrion and is involved in karyogamy during female gametophyte development and fertilization. Mutants display defects in both male and female gametophyte development (i.e.collapsed pollen and female gametophytes with unfused central cells).
Computational
Description (TAIR10)
NUCLEAR FUSION DEFECTIVE 1 (NFD1); FUNCTIONS IN: structural constituent of ribosome, RNA binding; INVOLVED IN: translation, karyogamy, embryo sac development, double fertilization forming a zygote and endosperm, pollen development; LOCATED IN: mitochondrion, ribosome; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Ribosomal protein L21, conserved site (InterPro:IPR018258), Ribosomal protein L21 (InterPro:IPR001787); BEST Arabidopsis thaliana protein match is: Ribosomal protein L21 (TAIR:AT1G35680.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioGrid:14504eggNOG:ENOG4111TX4eggNOG:KOG1686EMBL:AB493710
EMBL:AJ278909EMBL:AK228212EMBL:AL022198EMBL:AL161578
EMBL:AY088563EMBL:BT005870EMBL:CP002687EnsemblPlants:AT4G30930
EnsemblPlants:AT4G30930.1entrez:829217GeneID:829217Genevisible:Q8L9A0
GO:GO:0000741GO:GO:0003735GO:GO:0005739GO:GO:0005840
GO:GO:0006412GO:GO:0007338GO:GO:0009553GO:GO:0009555
GO:GO:0009567GO:GO:0010197GO:GO:0019843Gramene:AT4G30930.1
HAMAP:MF_01363hmmpanther:PTHR21349hmmpanther:PTHR21349:SF0InParanoid:Q8L9A0
IntAct:Q8L9A0InterPro:IPR001787InterPro:IPR018258InterPro:IPR028909
KEGG:ath:AT4G30930KO:K02888OMA:ADMEVERPaxDb:Q8L9A0
Pfam:PF00829Pfam:Q8L9A0PhylomeDB:Q8L9A0PIR:B85362
PRIDE:Q8L9A0PRO:PR:Q8L9A0PROSITE:PS01169ProteinModelPortal:Q8L9A0
Proteomes:UP000006548RefSeq:NP_567861.1scanprosite:PS01169SMR:Q8L9A0
STRING:3702.AT4G30930.1SUPFAM:SSF141091TAIR:AT4G30930tair10-symbols:NFD1
TIGRfam:TIGR00061TIGRFAMs:TIGR00061UniGene:At.23122UniProt:Q8L9A0
Coordinates (TAIR10) chr4:-:15050170..15051630
Molecular Weight (calculated) 30909.30 Da
IEP (calculated) 5.49
GRAVY (calculated) -0.73
Length 270 amino acids
Sequence (TAIR10)
(BLAST)
001: MASLRCFREL SRRATTVFSI NQTRSISSFH GIEFSGTSIS HGTVIPNRSL TRNLPWYSHW YRSQDRCFSS NTKDTDEDEE SSEGEDDDEE EGEDFEDSAD
101: MEVEREYSPA EKVEEAEEIG YKVMGPLKPS ERLFKPYEPV FAIVQIGSHQ FKVSNGDSIF TEKLKFCDIN DKLELTKVLL LGSASQTIIG RPILPDATVH
201: AVVEEHALDE KVLIFKKKRR KNYRRTRGHR QELTKLRITD IQGIEKPEPK IVHKPSKEAV TEQTKAELVA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)