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AT4G30890.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.918
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : ubiquitin-specific protease 24
Curator
Summary (TAIR10)
Encodes a ubiquitin-specific protease.
Computational
Description (TAIR10)
ubiquitin-specific protease 24 (UBP24); FUNCTIONS IN: ubiquitin-specific protease activity, ubiquitin thiolesterase activity; INVOLVED IN: ubiquitin-dependent protein catabolic process; LOCATED IN: nucleus; EXPRESSED IN: 25 plant structures; EXPRESSED DURING: 14 growth stages; CONTAINS InterPro DOMAIN/s: Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site (InterPro:IPR018200), Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2 (InterPro:IPR001394); BEST Arabidopsis thaliana protein match is: ubiquitin-specific protease 15 (TAIR:AT1G17110.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30890-MONOMERBioCyc:ARA:GQT-738-MONOMERBioCyc:ARA:GQT-739-MONOMERBioGrid:14500EC:3.4.19.12eggNOG:ENOG410XSIHeggNOG:KOG1871
EMBL:AF302672EMBL:AL022198EMBL:AL161577EMBL:AY127002EMBL:BT000568EMBL:CP002687EnsemblPlants:AT4G30890
EnsemblPlants:AT4G30890.1EnsemblPlants:AT4G30890.2EnsemblPlants:AT4G30890.3entrez:829213GeneID:829213Genevisible:Q9FPS3GO:GO:0005634
GO:GO:0006511GO:GO:0016579GO:GO:0036459Gramene:AT4G30890.1Gramene:AT4G30890.2Gramene:AT4G30890.3hmmpanther:PTHR24006
hmmpanther:PTHR24006:SF529HOGENOM:HOG000084329InParanoid:Q9FPS3InterPro:IPR001394InterPro:IPR018200InterPro:IPR028889InterPro:IPR033382
iPTMnet:Q9FPS3KEGG:ath:AT4G30890KO:K11841MEROPS:C19.A14OMA:LLKPVHFPANTHER:PTHR24006:SF529PaxDb:Q9FPS3
Pfam:PF00443Pfam:Q9FPS3Pfscan:PS50235PhylomeDB:Q9FPS3PIR:F85361PRIDE:Q9FPS3PRO:PR:Q9FPS3
PROSITE:PS00972PROSITE:PS00973PROSITE:PS50235ProteinModelPortal:Q9FPS3Proteomes:UP000006548Reactome:R-ATH-5656169RefSeq:NP_001190875.1
RefSeq:NP_567860.1RefSeq:NP_974644.1scanprosite:PS00972scanprosite:PS00973SMR:Q9FPS3STRING:3702.AT4G30890.1SUPFAM:SSF54001
TAIR:AT4G30890tair10-symbols:UBP24UniGene:At.22252UniProt:Q9FPS3
Coordinates (TAIR10) chr4:-:15036383..15038825
Molecular Weight (calculated) 60443.30 Da
IEP (calculated) 8.11
GRAVY (calculated) -0.48
Length 551 amino acids
Sequence (TAIR10)
(BLAST)
001: MSEKKVFVFG SFTEHETRSF FEQKPTKDPQ NSKDKCVGSI QFGSLNLAAE NSSVNTNGEL KKGEADGTVK SAGSQERLDA SRPASSDKNN DSDAKLPRKN
101: SLRVPEHVVQ NGIIKEISES NKSLNNGVAV KTDPIGLDNL SMSDGESDPV YKASSSKFQA LDNEDFSSDS SSGSIQRKKN LKVPTESVPP VKDFTPRGLI
201: NAGNLCFLNA TLQALLSCSP FVQLLQKIQL QDIPKADSPT LAAFSEFISE LDVPSSSSIR NNVTVVEAGR PFRPAMFEGV LRNFTPDVLN NMSGRPRQED
301: AQEFLSFIMD QMHDELLKLK EQSPKVTASK SSVISSANDD GDEWETVGPK NKSAVTRTQS FVPSELSEIF GGQLKSVVKA KGTKASATVQ PYLLLHLDIH
401: PDGVQGIEDA LHLFSAQEDL EGYRASVTGK TGVVSASKSI KIQKLSKIMI LHLMRFSYGS QGSTKLRKGV KFPLELNLNR SHLVSLSNES LRYELVATIT
501: HHGWDPSKGH YTTDARRKNG QWLRFDDASV TPIGTKLVLH DQAYVLFYKQ V
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)