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AT4G30770.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.926
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data
Description (TAIR10) protein_coding : Putative membrane lipoprotein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Putative membrane lipoprotein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system; EXPRESSED IN: male gametophyte, flower, pollen tube; EXPRESSED DURING: L mature pollen stage, M germinated pollen stage, 4 anthesis; BEST Arabidopsis thaliana protein match is: Putative membrane lipoprotein (TAIR:AT5G17590.1); Has 36 Blast hits to 36 proteins in 9 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410J2GEeggNOG:ENOG410Z2H1EMBL:AL109787EMBL:AL161577
EMBL:CP002687EMBL:DQ446886EnsemblPlants:AT4G30770EnsemblPlants:AT4G30770.1
entrez:829200GeneID:829200GO:GO:0016021Gramene:AT4G30770.1
hmmpanther:PTHR34964hmmpanther:PTHR34964:SF3KEGG:ath:AT4G30770OMA:FGFRMVV
Pfscan:PS51257PhylomeDB:Q9SUG9PIR:B85360Proteomes:UP000006548
RefSeq:NP_194806.1TAIR:AT4G30770TMHMM:TMhelixUniGene:At.65438
UniProt:Q9SUG9
Coordinates (TAIR10) chr4:-:14986140..14986613
Molecular Weight (calculated) 17158.60 Da
IEP (calculated) 4.42
GRAVY (calculated) 0.16
Length 157 amino acids
Sequence (TAIR10)
(BLAST)
001: MPVPDPRAGQ AFICLITLFL FLSIAVGGGC LIAYTILPYP PVWLSYLGIV FVCLPWFFWI LTFAYRIVSR TFGFRMVVGS GGNNNNANGE TMTRDLDPPE
101: QSLESPDDDD PEPIAHPQGQ VLVSIEGNQS KKRMSTSSNS TIASHESEMP LAISMAS
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)