AT4G30720.1
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Subcellular Consensus
(Prediction and Experimental) min:  :max.
SUBAcon:plastid 1.000 What is SUBAcon? |
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| Experimental Localisations and PPI |
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SUBAcon links
AGI-AGI relationships |
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| Description (TAIR10) | protein_coding : FAD/NAD(P)-binding oxidoreductase family protein | ||||||||||||||||||||||||||||||||||||
| Curator Summary (TAIR10) |
Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth. | ||||||||||||||||||||||||||||||||||||
| Computational Description (TAIR10) |
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, FAD binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Adrenodoxin reductase (InterPro:IPR000759), FAD dependent oxidoreductase (InterPro:IPR006076), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); Has 2466 Blast hits to 2466 proteins in 951 species: Archae - 126; Bacteria - 2117; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink). | ||||||||||||||||||||||||||||||||||||
| Protein Annotations |
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| Coordinates (TAIR10) | chr4:-:14972212..14975461 | ||||||||||||||||||||||||||||||||||||
| Molecular Weight (calculated) | 77094.60 Da | ||||||||||||||||||||||||||||||||||||
| IEP (calculated) | 8.74 | ||||||||||||||||||||||||||||||||||||
| GRAVY (calculated) | -0.15 | ||||||||||||||||||||||||||||||||||||
| Length | 707 amino acids | ||||||||||||||||||||||||||||||||||||
| Sequence (TAIR10) (BLAST) |
001: MSLSQTNFLS SSLLSSSHDL RIPYSRAVLS YPRIQTHRIL CAAKRTGKRR YPSERRKLRT EQKEAVAKVK NKLEGVWRLS KLGVPVGDDP GKDFLGISEG 101: LLQAIAKVIE FPVASMLPEE AFSVIRKSFD ARKILKEAKF VYTVDLDVKT LLELEPRAHD FIFRLEPKIG LIEHVPTEKS VSGDLISVVN DCKRINSETA 201: SGEYEPQIIN GSGDPHHHGG GRSKPKIAVV GGGPSGLFAA LVLAEFGADV TLIERGQAVE ERGRDIGALV VRKILDMESN FCFGEGGAGT WSDGKLVTRI 301: GKNSATVLAV LKTLVRFGAP DNILVNGKPH LGTDKLVPLL RNFRHYLQSA GVTIKFGTRV DDLLVEDSRV VGVRVSDSTN QLQTTSQNLK VDAVVLAVGH 401: SARDTYEMLH SRNVELIPKD FAVGLRIEHP QELINSIQYS DLANEVLKGR GKVPVADYKV VQYVNDKTED LSQSSSKRSC YSFCMCPGGQ VVLTSTNPTE 501: LCINGMSFSR RSSKWANAAL VVTVSAKDFD VLNLKGPLAG IEFQREFERR AAIMGGGDFT VPVQRVTDFL QNKLSETPLP PSSYRLGVKS ANLHELFPAH 601: ITEALRESIS MFEKELPGFI SEEALLHGVE TRTSSPVRIP RSNETYESTS LKGLYPVGEG AGYAGGIVSA AVDGMFSGFA VAKSFDLFDG TIESVIGKAQ 701: GAGLVKY |
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| See Also |
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Citation
If you find this resource useful please cite one of the following publications:
Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)
Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)