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AT4G30720.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:20423899 (2010): plastid
  • PMID:18431481 (2008): plastid plastid stroma
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : FAD/NAD(P)-binding oxidoreductase family protein
Curator
Summary (TAIR10)
Encodes a putative oxidoreductase/electron carrier detected in the chloroplast stroma that is essential to ensure a correct electron flow through the photosynthetic chain and, hence, photosynthesis efficiency and normal growth. Mutations in the Col-0 allele result in pale green pigmentation and defective growth.
Computational
Description (TAIR10)
FAD/NAD(P)-binding oxidoreductase family protein; FUNCTIONS IN: oxidoreductase activity, FAD binding; INVOLVED IN: photosynthesis; LOCATED IN: chloroplast; EXPRESSED IN: 18 plant structures; EXPRESSED DURING: 11 growth stages; CONTAINS InterPro DOMAIN/s: Adrenodoxin reductase (InterPro:IPR000759), FAD dependent oxidoreductase (InterPro:IPR006076), Pyridine nucleotide-disulphide oxidoreductase, NAD-binding region (InterPro:IPR001327); Has 2466 Blast hits to 2466 proteins in 951 species: Archae - 126; Bacteria - 2117; Metazoa - 0; Fungi - 2; Plants - 26; Viruses - 0; Other Eukaryotes - 195 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2509eggNOG:ENOG410IG7TEMBL:CP002687EnsemblPlants:AT4G30720EnsemblPlants:AT4G30720.1entrez:829195Gene3D:3.50.50.60
GeneID:829195GO:GO:0009507GO:GO:0015979GO:GO:0016491Gramene:AT4G30720.1hmmpanther:PTHR10617hmmpanther:PTHR10617:SF52
InParanoid:F4JQE2InterPro:IPR003953InterPro:IPR023753iPTMnet:F4JQE2KEGG:ath:AT4G30720OMA:AEYKLVHPaxDb:F4JQE2
Pfam:PF00070Pfam:PF00890Pfam:PF07992PRIDE:F4JQE2ProteinModelPortal:F4JQE2Proteomes:UP000006548RefSeq:NP_194801.4
SMR:F4JQE2STRING:3702.AT4G30720.1SUPFAM:SSF51905TAIR:AT4G30720UniGene:At.3677UniProt:F4JQE2
Coordinates (TAIR10) chr4:-:14972212..14975461
Molecular Weight (calculated) 77094.60 Da
IEP (calculated) 8.74
GRAVY (calculated) -0.15
Length 707 amino acids
Sequence (TAIR10)
(BLAST)
001: MSLSQTNFLS SSLLSSSHDL RIPYSRAVLS YPRIQTHRIL CAAKRTGKRR YPSERRKLRT EQKEAVAKVK NKLEGVWRLS KLGVPVGDDP GKDFLGISEG
101: LLQAIAKVIE FPVASMLPEE AFSVIRKSFD ARKILKEAKF VYTVDLDVKT LLELEPRAHD FIFRLEPKIG LIEHVPTEKS VSGDLISVVN DCKRINSETA
201: SGEYEPQIIN GSGDPHHHGG GRSKPKIAVV GGGPSGLFAA LVLAEFGADV TLIERGQAVE ERGRDIGALV VRKILDMESN FCFGEGGAGT WSDGKLVTRI
301: GKNSATVLAV LKTLVRFGAP DNILVNGKPH LGTDKLVPLL RNFRHYLQSA GVTIKFGTRV DDLLVEDSRV VGVRVSDSTN QLQTTSQNLK VDAVVLAVGH
401: SARDTYEMLH SRNVELIPKD FAVGLRIEHP QELINSIQYS DLANEVLKGR GKVPVADYKV VQYVNDKTED LSQSSSKRSC YSFCMCPGGQ VVLTSTNPTE
501: LCINGMSFSR RSSKWANAAL VVTVSAKDFD VLNLKGPLAG IEFQREFERR AAIMGGGDFT VPVQRVTDFL QNKLSETPLP PSSYRLGVKS ANLHELFPAH
601: ITEALRESIS MFEKELPGFI SEEALLHGVE TRTSSPVRIP RSNETYESTS LKGLYPVGEG AGYAGGIVSA AVDGMFSGFA VAKSFDLFDG TIESVIGKAQ
701: GAGLVKY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)