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AT4G30690.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
plastid 1.000
ASURE: plastid
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:24872594 (2014): plastid plastid stroma
  • PMID:24872594 (2014): plastid plastid thylakoid
  • PMID:23396599 (2013): nucleus nuclear envelope nuclear inner membrane
  • PMID:21531424 (2011): plastid
  • PMID:20423899 (2010): plastid
  • PMID:20061580 (2010): plastid plastid stroma
  • PMID:20061580 (2010): plastid plastid thylakoid
  • PMID:18431481 (2008): plastid plastid stroma
  • PMID:15593128 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Translation initiation factor 3 protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Translation initiation factor 3 protein; FUNCTIONS IN: translation initiation factor activity; INVOLVED IN: translational initiation; LOCATED IN: cell wall, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: Translation initiation factor 3, N-terminal (InterPro:IPR019814), Translation initiation factor 3, conserved site (InterPro:IPR019813), Translation initiation factor 3, C-terminal (InterPro:IPR019815), Translation initiation factor 3 (InterPro:IPR001288); BEST Arabidopsis thaliana protein match is: Translation initiation factor 3 protein (TAIR:AT2G24060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0290eggNOG:ENOG410IECTEMBL:AY042848EMBL:AY072500EMBL:CP002687EnsemblPlants:AT4G30690EnsemblPlants:AT4G30690.1
entrez:829192ExpressionAtlas:Q94B52Gene3D:3.10.20.80Gene3D:3.30.110.10GeneID:829192GO:GO:0003743GO:GO:0005618
GO:GO:0009507Gramene:AT4G30690.1HAMAP:MF_00080hmmpanther:PTHR10938hmmpanther:PTHR10938:SF0HOGENOM:HOG000030813InterPro:IPR001288
InterPro:IPR019813InterPro:IPR019814InterPro:IPR019815OMA:NMKGRENPANTHER:PTHR10938Pfam:PF00707Pfam:PF05198
PhylomeDB:Q94B52PROSITE:PS00938Proteomes:UP000006548RefSeq:NP_567851.1scanprosite:PS00938SMR:Q94B52STRING:3702.AT4G30690.1
SUPFAM:0044019SUPFAM:SSF54364SUPFAM:SSF55200TAIR:AT4G30690TIGRfam:TIGR00168TIGRFAMs:TIGR00168UniGene:At.3675
UniGene:At.74203UniProt:Q94B52
Coordinates (TAIR10) chr4:+:14960742..14962328
Molecular Weight (calculated) 31825.30 Da
IEP (calculated) 10.11
GRAVY (calculated) -0.68
Length 281 amino acids
Sequence (TAIR10)
(BLAST)
001: MAGITSTVGF NAILAGATKT VSHPVKSKLF GLRLCVPEFS IVSLSPYHHR RCPAITCRYG GGGGGGSRFP GDRRGRQKES EDDDSLDISA IRSATVRLID
101: DQQNMIGLVS KEEAVRRAED AELDLVILSP DADPPVVRMM DYSKYRYEQQ KRKKEQQKKT TRMDLKELKM GYNIDQHDYS VRMRAARKFL QDGDKVKVIV
201: NMKGRENEFR NIAIELLRRF QTEIGELGTE ESKNFRDRNL FIVLVPNKEV IRKVQEPPPK KKKKPADDKV SAANITATQD I
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)