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AT4G30680.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
cytosol 1.000
ASURE: cytosol
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:22522809 (2012): cytosol cytosolic ribosomes
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Initiation factor eIF-4 gamma, MA3
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Initiation factor eIF-4 gamma, MA3; CONTAINS InterPro DOMAIN/s: Initiation factor eIF-4 gamma, MA3 (InterPro:IPR003891); BEST Arabidopsis thaliana protein match is: MIF4G domain-containing protein / MA3 domain-containing protein (TAIR:AT2G24050.1); Has 861 Blast hits to 624 proteins in 104 species: Archae - 0; Bacteria - 2; Metazoa - 367; Fungi - 10; Plants - 428; Viruses - 0; Other Eukaryotes - 54 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG410XS4PeggNOG:KOG0401EMBL:AL109787EMBL:AL161577EMBL:CP002687EnsemblPlants:AT4G30680EnsemblPlants:AT4G30680.1
entrez:829191Gene3D:1.25.40.180GeneID:829191GO:GO:0003743Gramene:AT4G30680.1hmmpanther:PTHR23253hmmpanther:PTHR23253:SF32
InterPro:IPR003891InterPro:IPR016021InterPro:IPR016024KEGG:ath:AT4G30680OMA:DQDEERCPfam:PF02847Pfscan:PS51366
PhylomeDB:Q9SUH8PIR:A85359PROSITE:PS51366Proteomes:UP000006548RefSeq:NP_194797.1SMART:SM00544SMR:Q9SUH8
STRING:3702.AT4G30680.1SUPFAM:SSF48371TAIR:AT4G30680UniGene:At.28762UniProt:Q9SUH8
Coordinates (TAIR10) chr4:-:14958687..14960012
Molecular Weight (calculated) 28394.20 Da
IEP (calculated) 5.21
GRAVY (calculated) -0.31
Length 263 amino acids
Sequence (TAIR10)
(BLAST)
001: MQQGDSMLSL RPGGGRGGSR RFAPRFTLSS SSDLTNGGDA PSFAVKGSGG LLNDRPSALV QGNGSQQPKP VPSPTRQTVE KPKPQPQPQE VAPPTTTSLN
101: TVELSRKTNS LLEEYFNVRL LDEALQCIEE LKTPSYHPEL VKEAISLGLE KNPPCVEPVA KLLEHLVSKN VLTPKDLRNG CLLYGSMLDD IGIDLPKAPN
201: NFGEILGSLV MAKASDSELV KEILMKMGDE WFKKAVLEAV MRSVSESLLT TEAVEVEACR GLV
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)