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AT4G30660.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 0.995
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Low temperature and salt responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Low temperature and salt responsive protein family; INVOLVED IN: response to cold, hyperosmotic salinity response; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT2G24040.1); Has 1253 Blast hits to 1253 proteins in 413 species: Archae - 0; Bacteria - 522; Metazoa - 40; Fungi - 292; Plants - 377; Viruses - 0; Other Eukaryotes - 22 (source: NCBI BLink).
Protein Annotations
BioGrid:14476eggNOG:COG0401eggNOG:KOG1773EMBL:AL109787EMBL:AL161577EMBL:BT029529EMBL:CP002687
EnsemblPlants:AT4G30660EnsemblPlants:AT4G30660.1EnsemblPlants:AT4G30660.2entrez:829189GeneID:829189Genevisible:Q9SUI0GO:GO:0016021
Gramene:AT4G30660.1Gramene:AT4G30660.2hmmpanther:PTHR21659HOGENOM:HOG000274029InParanoid:Q9SUI0InterPro:IPR000612KEGG:ath:AT4G30660
OMA:NCEILCEPANTHER:PTHR21659PaxDb:Q9SUI0Pfam:PF01679Pfam:Q9SUI0PhylomeDB:Q9SUI0PIR:G85358
PRIDE:Q9SUI0PRO:PR:Q9SUI0PROSITE:PS01309Proteomes:UP000006548RefSeq:NP_001154278.1RefSeq:NP_194795.1scanprosite:PS01309
STRING:3702.AT4G30660.1TAIR:AT4G30660TMHMM:TMhelixUniGene:At.31814UniGene:At.65434UniProt:Q9SUI0
Coordinates (TAIR10) chr4:+:14955470..14955944
Molecular Weight (calculated) 8519.75 Da
IEP (calculated) 4.87
GRAVY (calculated) 0.89
Length 74 amino acids
Sequence (TAIR10)
(BLAST)
1: MPSNCEILCE IIIAILLPPL GVCFRKGCCT VEFLICLVLT ILGYVPGIIY AIYVIVFQHR EEYFDEYRRP IYSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)