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AT4G30650.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Low temperature and salt responsive protein family
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Low temperature and salt responsive protein family; INVOLVED IN: response to salt stress, response to cold, hyperosmotic salinity response, defense response to fungus; LOCATED IN: endomembrane system, integral to membrane; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Uncharacterised protein family UPF0057 (InterPro:IPR000612); BEST Arabidopsis thaliana protein match is: Low temperature and salt responsive protein family (TAIR:AT4G30660.2); Has 1315 Blast hits to 1315 proteins in 423 species: Archae - 0; Bacteria - 542; Metazoa - 42; Fungi - 322; Plants - 377; Viruses - 0; Other Eukaryotes - 32 (source: NCBI BLink).
Protein Annotations
eggNOG:COG0401eggNOG:KOG1773EMBL:AL161577EMBL:BT010774EMBL:BT011262EMBL:CP002687EnsemblPlants:AT4G30650
EnsemblPlants:AT4G30650.1entrez:829188ExpressionAtlas:Q9M095GeneID:829188Genevisible:Q9M095GO:GO:0016021GO:GO:0050832
Gramene:AT4G30650.1hmmpanther:PTHR21659HOGENOM:HOG000274029InParanoid:Q9M095InterPro:IPR000612KEGG:ath:AT4G30650OMA:HYGCCSM
PANTHER:PTHR21659PaxDb:Q9M095Pfam:PF01679Pfam:Q9M095PhylomeDB:Q9M095PIR:F85358PRIDE:C0SVK6
PRIDE:Q9M095PRO:PR:Q9M095PROSITE:PS01309Proteomes:UP000006548RefSeq:NP_194794.1scanprosite:PS01309STRING:3702.AT4G30650.1
TAIR:AT4G30650TMHMM:TMhelixUniGene:At.25536UniGene:At.31815UniProt:C0SVK6UniProt:Q9M095
Coordinates (TAIR10) chr4:+:14954403..14954698
Molecular Weight (calculated) 7906.08 Da
IEP (calculated) 4.33
GRAVY (calculated) 1.14
Length 73 amino acids
Sequence (TAIR10)
(BLAST)
1: MASNMEVFCE ILIAILLPPL GVCLKRGCCT VEFLICLVLT ILGYIPGIIY ALYVIVFQNR EGSTELGAPL NSA
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)