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AT4G30490.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
mitochondrion 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : AFG1-like ATPase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
AFG1-like ATPase family protein; FUNCTIONS IN: ATPase activity, ATP binding; INVOLVED IN: biological_process unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 15 growth stages; CONTAINS InterPro DOMAIN/s: ATPase, AFG1-like (InterPro:IPR005654); BEST Arabidopsis thaliana protein match is: AFG1-like ATPase family protein (TAIR:AT4G28070.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1485eggNOG:KOG2383EMBL:AY087968EMBL:AY099610EMBL:BT000265EMBL:CP002687EnsemblPlants:AT4G30490
EnsemblPlants:AT4G30490.1entrez:829172Gene3D:3.40.50.300GeneID:829172GO:GO:0005516GO:GO:0005524GO:GO:0005739
GO:GO:0009507Gramene:AT4G30490.1hmmpanther:PTHR12169hmmpanther:PTHR12169:SF6HOGENOM:HOG000259600InterPro:IPR005654InterPro:IPR027417
KEGG:ath:AT4G30490MINT:MINT-7046496OMA:HTIFINGPANTHER:PTHR12169Pfam:PF03969Proteomes:UP000006548RefSeq:NP_567847.1
STRING:3702.AT4G30490.1SUPFAM:SSF52540TAIR:AT4G30490UniGene:At.31832UniGene:At.60046UniProt:Q8L517
Coordinates (TAIR10) chr4:-:14899226..14901883
Molecular Weight (calculated) 56537.90 Da
IEP (calculated) 8.52
GRAVY (calculated) -0.26
Length 497 amino acids
Sequence (TAIR10)
(BLAST)
001: MRPIIRLSSL SRIRWALRNN QERYSSTFYS KSRKLLIGVN QNQALLNTNT DNSSLYSRSS IFRGLSAEAV EAADPATTRV TVSDVNRTGP LVEYERRISN
101: GELMTGDICQ ISALRELQRL YDELVDSVDT CRLDRYNTSD KSSRSRWFWS RLMPQTSYSP VKGLYLYGGV GTGKTMLMDL FFDQLPCTWK KQRIHFHDFM
201: LSVHSRLQKH KGLSDPLEVV AQEIAHDAIL LCLDEFMVTD VADALILNRL FGHLFSNGVI LVATSNRNPD KLYEGGLQRD LFLPFISSLK ERSVVHEIGS
301: AVDYRKLTSA EQGFYFIGKD LSTLLKQKFR QLIGDNVVAR PQVVEVVMGR KLQIPLGANG CAYFPFEELC DRPLGAADYF GLFKKFHTLA LDEIPVFGLH
401: NRTAAYRFVT LVDVMYENRA RLLCTAEANP QELLEKIITI SEAKSMGPRT SSRSRKNDVT ELCVDNELGF AKDRTISRLT EMNSKEYLEH HAITHNL
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)