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AT4G30480.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
nucleus 0.994
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : Tetratricopeptide repeat (TPR)-like superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Tetratricopeptide repeat (TPR)-like superfamily protein; FUNCTIONS IN: binding; LOCATED IN: cellular_component unknown; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Tetratricopeptide TPR-1 (InterPro:IPR001440), Tetratricopeptide-like helical (InterPro:IPR011990), Tetratricopeptide repeat-containing (InterPro:IPR013026), Tetratricopeptide repeat (InterPro:IPR019734); BEST Arabidopsis thaliana protein match is: tetratricopetide-repeat thioredoxin-like 4 (TAIR:AT3G58620.1); Has 7022 Blast hits to 5881 proteins in 426 species: Archae - 96; Bacteria - 637; Metazoa - 2797; Fungi - 861; Plants - 1268; Viruses - 25; Other Eukaryotes - 1338 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111IF0eggNOG:KOG4234EMBL:AF386955EMBL:BT006252EMBL:CP002687EnsemblPlants:AT4G30480EnsemblPlants:AT4G30480.1
entrez:829171ExpressionAtlas:Q94F21Gene3D:1.10.150.160Gene3D:1.25.40.10GeneID:829171Gramene:AT4G30480.1hmmpanther:PTHR22904
HOGENOM:HOG000231571InterPro:IPR011990InterPro:IPR013026InterPro:IPR019734InterPro:IPR023114Pfam:PF13414Pfscan:PS50005
Pfscan:PS50293PhylomeDB:Q94F21PROSITE:PS50005PROSITE:PS50293Proteomes:UP000006548RefSeq:NP_849557.1SMART:SM00028
SMR:Q94F21STRING:3702.AT4G30480.2SUPFAM:SSF48452TAIR:AT4G30480tair10-symbols:AtTPR1tair10-symbols:TPR1UniGene:At.31832
UniGene:At.60046UniProt:Q94F21
Coordinates (TAIR10) chr4:+:14897500..14898557
Molecular Weight (calculated) 23135.50 Da
IEP (calculated) 4.03
GRAVY (calculated) -0.79
Length 208 amino acids
Sequence (TAIR10)
(BLAST)
001: MVLIESSESE DEILIKNEPK PASSSSPQPT ETKQVDGDDS DGFETASERE ISDEEGEEDG TKNDAVTSQE EPQHSEKKEE QIELMSEGEA IVDDGSNKEK
101: ALAEANEAKA EGNKLFVNGL YEEALSKYAF ALELVQELPE SIELRSICYL NRGVCFLKLG KCEETIKECT KALELNPTYN KALVRRAEAH EKLEHFEDAV
201: TGLVEEPY
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)