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AT4G30360.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
plasma membrane 0.998
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : cyclic nucleotide-gated channel 17
Curator
Summary (TAIR10)
member of Cyclic nucleotide gated channel family
Computational
Description (TAIR10)
cyclic nucleotide-gated channel 17 (CNGC17); FUNCTIONS IN: ion channel activity, cyclic nucleotide binding, calmodulin binding; INVOLVED IN: potassium ion transport, ion transport, transmembrane transport; LOCATED IN: membrane; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Cyclic nucleotide-binding (InterPro:IPR000595), Ion transport (InterPro:IPR005821), Cyclic nucleotide-binding-like (InterPro:IPR018490), Potassium channel, voltage-dependent, EAG/ELK/ERG (InterPro:IPR003938), RmlC-like jelly roll fold (InterPro:IPR014710); BEST Arabidopsis thaliana protein match is: cyclic nucleotide-gated channel 14 (TAIR:AT2G24610.1); Has 3400 Blast hits to 3264 proteins in 232 species: Archae - 0; Bacteria - 47; Metazoa - 1584; Fungi - 2; Plants - 959; Viruses - 0; Other Eukaryotes - 808 (source: NCBI BLink).
Protein Annotations
BioGrid:14446eggNOG:ENOG410XPSEeggNOG:KOG0498EMBL:AL161576
EMBL:AY124000EMBL:BT002284EMBL:CP002687EnsemblPlants:AT4G30360
EnsemblPlants:AT4G30360.1entrez:829159ExpressionAtlas:Q8L7Z0Gene3D:2.60.120.10
GeneID:829159Genevisible:Q8L7Z0GO:GO:0005249GO:GO:0005886
GO:GO:0016021GO:GO:0030552GO:GO:0030553GO:GO:0042391
GO:GO:0071805Gramene:AT4G30360.1hmmpanther:PTHR10217hmmpanther:PTHR10217:SF544
HOGENOM:HOG000238338InParanoid:Q8L7Z0InterPro:IPR000595InterPro:IPR003938
InterPro:IPR005821InterPro:IPR014710InterPro:IPR018490KEGG:ath:AT4G30360
KO:K05391ncoils:CoilOMA:KAIAWRYPaxDb:Q8L7Z0
Pfam:PF00027Pfam:PF00520Pfam:Q8L7Z0Pfscan:PS50042
PhylomeDB:Q8L7Z0PIR:A85355PRIDE:Q8L7Z0PRINTS:PR01463
PRO:PR:Q8L7Z0PROSITE:PS50042ProteinModelPortal:Q8L7Z0Proteomes:UP000006548
Reactome:R-ATH-2485179Reactome:R-ATH-2514859Reactome:R-ATH-5620916RefSeq:NP_194765.2
SMART:SM00100SMR:Q8L7Z0STRING:3702.AT4G30360.1SUPFAM:SSF51206
SUPFAM:SSF81324TAIR:AT4G30360tair10-symbols:ATCNGC17tair10-symbols:CNGC17
TMHMM:TMhelixUniGene:At.31840UniGene:At.69303UniProt:Q0WUI2
UniProt:Q8L7Z0
Coordinates (TAIR10) chr4:-:14855060..14857779
Molecular Weight (calculated) 83365.80 Da
IEP (calculated) 8.66
GRAVY (calculated) -0.13
Length 720 amino acids
Sequence (TAIR10)
(BLAST)
001: MELRKDKLLM FYSEGKESKE AKWAVNDPMS KSYKLSLPSA LRPDNLLPGN RLRYTDASKS KSSKVSWYKT ILDPGSEIVL KWNWVFIVSC MVALFIDPLY
101: FFVPAIGGDK NYPCARTDTS LSILVTFFRT IADLFYLLHI FIKFRTGFIA PNSSTRVFGR GELVMDPKAI AWRYIKSDFI IDLIATLPLP QIVIWFVIST
201: TKSYRFDHNN NAIALIVLLQ YIPRFYLIIP LSSQIVKATG VVTKTAWAGA AYNLLLYMLA SHVLGAAWYI LSVDRYTSCW KSRCNGEAGQ VNCQLYYLDC
301: DSMYDNNQMT WANVTKVFKL CDARNGEFKY GIFGNAITKN VVSSQFFERY FYCLWWGLQQ LSSYGQNLST TMFMGETTFA VLIAIFGLVL FAHLIGNMQT
401: YLQSLTVRLE EWRLKKRDTE EWMRHRQLPE ELRNRVRRYE QYKWLATRGV DEEVLLQSLP TDLRRDIQRH LCLDLVRRVP FFSQMDDQLL DAICERLVSS
501: LCTEGTYLVR EGDLISEMLF IIRGRLESST TNGGRTGFFN SIILRPGDFC GEELLSWALL PKSTLNLPSS TRTVRALVEV EAFALRAEDL KFVANQFRRL
601: HSKKLQHTFR FYSHHWRTWA ACFIQAAWRR YKRRVMENNL TAIESMENEE GEVGEELVVV EEEECVEESP RTKMNLGVMV LASRFAANTR RGVAAQRVKD
701: VELPRFKKPE EPDFSAEHDD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)