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AT4G30320.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endomembrane system, extracellular region; EXPRESSED IN: root; CONTAINS InterPro DOMAIN/s: Allergen V5/Tpx-1 related, conserved site (InterPro:IPR018244), Allergen V5/Tpx-1 related (InterPro:IPR001283), Ves allergen (InterPro:IPR002413), SCP-like extracellular (InterPro:IPR014044); BEST Arabidopsis thaliana protein match is: CAP (Cysteine-rich secretory proteins, Antigen 5, and Pathogenesis-related 1 protein) superfamily protein (TAIR:AT5G57625.1); Has 2975 Blast hits to 2877 proteins in 376 species: Archae - 0; Bacteria - 64; Metazoa - 1595; Fungi - 339; Plants - 887; Viruses - 0; Other Eukaryotes - 90 (source: NCBI BLink).
Protein Annotations
eggNOG:COG2340eggNOG:KOG3017EMBL:AL161576EMBL:CP002687EnsemblPlants:AT4G30320EnsemblPlants:AT4G30320.1entrez:829155
Gene3D:3.40.33.10GeneID:829155GO:GO:0005576Gramene:AT4G30320.1hmmpanther:PTHR10334hmmpanther:PTHR10334:SF204HOGENOM:HOG000036879
InterPro:IPR001283InterPro:IPR002413InterPro:IPR014044InterPro:IPR018244KEGG:ath:AT4G30320OMA:FLAPQNAPANTHER:PTHR10334
Pfam:PF00188PhylomeDB:Q9M0C8PIR:E85354PRINTS:PR00837PRINTS:PR00838PROSITE:PS01009PROSITE:PS01010
Proteomes:UP000006548RefSeq:NP_194761.1scanprosite:PS01009scanprosite:PS01010SMART:SM00198SMR:Q9M0C8STRING:3702.AT4G30320.1
SUPFAM:SSF55797TAIR:AT4G30320UniGene:At.54556UniProt:Q9M0C8
Coordinates (TAIR10) chr4:+:14835833..14836318
Molecular Weight (calculated) 18028.40 Da
IEP (calculated) 8.84
GRAVY (calculated) -0.39
Length 161 amino acids
Sequence (TAIR10)
(BLAST)
001: MAFPSCVSVA ITAMMLLVTC CHCATYQEQF MGPQNAARAH LRLKPLKWDA KLARYAQWWA NQRRGDCALT HSNGPYGENL FWGSGNRWGP SQAAYGWLSE
101: ARSYNYRSNS CNSEMCGHYT QIVWKNTQKI GCAHVICNGG GGVFLTCNYD PPGNFLGRKP Y
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)