suba logo
AT4G30300.1
Subcellular Consensus
(Prediction and Experimental)

min: heatmap :max

.
SUBAcon:
cytosol 0.999
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : non-intrinsic ABC protein 15
Curator
Summary (TAIR10)
member of NAP subfamily
Computational
Description (TAIR10)
non-intrinsic ABC protein 15 (NAP15); CONTAINS InterPro DOMAIN/s: ATPase, AAA+ type, core (InterPro:IPR003593), ABC transporter-like (InterPro:IPR003439); BEST Arabidopsis thaliana protein match is: RNAse l inhibitor protein 2 (TAIR:AT4G19210.1); Has 178874 Blast hits to 170972 proteins in 3466 species: Archae - 4111; Bacteria - 144876; Metazoa - 3882; Fungi - 1523; Plants - 1775; Viruses - 14; Other Eukaryotes - 22693 (source: NCBI BLink).
Protein Annotations
eggNOG:COG1245eggNOG:KOG0063EMBL:AL161576EMBL:CP002687EMBL:DQ056666EnsemblPlants:AT4G30300EnsemblPlants:AT4G30300.1
entrez:829153Gene3D:3.40.50.300GeneID:829153Genevisible:Q9M0D0GO:GO:0005215GO:GO:0005524GO:GO:0016887
Gramene:AT4G30300.1hmmpanther:PTHR19248HOGENOM:HOG000033750InParanoid:Q9M0D0InterPro:IPR003439InterPro:IPR003593InterPro:IPR013283
InterPro:IPR027417KEGG:ath:AT4G30300OMA:PRFRDESPANTHER:PTHR19248PaxDb:Q9M0D0Pfam:PF00005Pfam:Q9M0D0
PhylomeDB:Q9M0D0PIR:C85354PRO:PR:Q9M0D0PROSITE:PS00211ProteinModelPortal:Q9M0D0Proteomes:UP000006548RefSeq:NP_194759.1
SMART:SM00382SMR:Q9M0D0STRING:3702.AT4G30300.1SUPFAM:SSF52540TAIR:AT4G30300tair10-symbols:ATNAP15tair10-symbols:NAP15
UniGene:At.64201UniProt:Q9M0D0
Coordinates (TAIR10) chr4:-:14831005..14831550
Molecular Weight (calculated) 20633.10 Da
IEP (calculated) 9.84
GRAVY (calculated) -0.31
Length 181 amino acids
Sequence (TAIR10)
(BLAST)
001: MTITRGDFKL RLNQGEFTDS QIIVMLGENG TGKTTFIKML AGSKLDIDEE GSQVHEIPQF SVSYKNQHMS NRKFEITVRD LIHRKIPNAY AEHQFVSDVM
101: KPLKIEELMD KSFNKLSGGE KQRVALALCL GKSADIYLID EPSAFLDSEQ RIIASKVIKR FILQMKKAAF ARFHNGYVFG R
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)