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AT4G30220.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
nucleus 1.000
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
Description (TAIR10) protein_coding : small nuclear ribonucleoprotein F
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
small nuclear ribonucleoprotein F (RUXF); FUNCTIONS IN: molecular_function unknown; LOCATED IN: nucleolus, nucleus, small nucleolar ribonucleoprotein complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Small nuclear ribonucleoprotein SmF (InterPro:IPR016487), Like-Sm ribonucleoprotein (LSM) domain (InterPro:IPR001163), Like-Sm ribonucleoprotein (LSM)-related domain (InterPro:IPR010920), Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type (InterPro:IPR006649); BEST Arabidopsis thaliana protein match is: Small nuclear ribonucleoprotein family protein (TAIR:AT2G14285.1); Has 1186 Blast hits to 1186 proteins in 302 species: Archae - 341; Bacteria - 0; Metazoa - 298; Fungi - 260; Plants - 126; Viruses - 0; Other Eukaryotes - 161 (source: NCBI BLink).
Protein Annotations
eggNOG:ENOG4111W47eggNOG:KOG3482EMBL:AK227757EnsemblPlants:AT4G30220
EnsemblPlants:AT4G30220.1entrez:5007874entrez:829145ExpressionAtlas:Q0WT08
GeneID:829145GO:GO:0000398GO:GO:0003723GO:GO:0005681
GO:GO:0005732Gramene:AT4G30220.1hmmpanther:PTHR11021InterPro:IPR001163
InterPro:IPR010920InterPro:IPR016487PaxDb:Q0WT08Pfam:PF01423
Pfam:Q9SUM2PhylomeDB:Q0WT08PIRSF:PIRSF006609PRIDE:Q0WT08
ProteinModelPortal:Q0WT08RefSeq:NP_194751.1SMART:SM00651SMR:Q0WT08
STRING:3702.AT4G30220.2SUPFAM:SSF50182TAIR:AT4G30220tair10-symbols:RUXF
UniGene:At.31849UniProt:Q0WT08UniProt:Q9SUM2
Coordinates (TAIR10) chr4:-:14803100..14804259
Molecular Weight (calculated) 9864.79 Da
IEP (calculated) 4.05
GRAVY (calculated) -0.27
Length 88 amino acids
Sequence (TAIR10)
(BLAST)
1: MATIPVNPKP FLNNLTGKTV IVKLKWGMEY KGFLASVDSY MNLQLGNTEE YIDGQLTGNL GEILIRCNNV LYVRGVPEDE ELEDADQD
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)