AT4G30200.1::SUBA5

AT4G30200.1

Subcellular Consensus
(Prediction and Experimental)

min:

:max

SUBAcon:
nucleus 0.998
What is SUBAcon?

Predictors

External Curations

AmiGO : nucleus 18854416
TAIR : nucleus 18854416

Experimental Localisations and PPI

FP	MS/MS	PPI
		PMID:23778966 (2013): AT4G27090.1:None: PMID:23778966 (2013): AT3G20740.1:None: PMID:23778966 (2013): AT5G15020.1:None: PMID:23778966 (2013): AT4G29000.1:None: PMID:23778966 (2013): AT1G70060.1:None: PMID:23778966 (2013): AT5G08450.1:None: PMID:23778966 (2013): AT2G41840.1:None: PMID:23778966 (2013): AT1G24190.1:None: PMID:23778966 (2013): AT1G10450.1:None: PMID:23778966 (2013): AT1G05190.1:None: PMID:23778966 (2013): AT3G24440.1:None: PMID:23778966 (2013): AT4G38130.1:None: PMID:23778966 (2013): AT4G16143.1:None: PMID:23778966 (2013): AT2G32840.1:None: PMID:23778966 (2013): AT4G16845.1:None: PMID:23778966 (2013): AT2G45250.1:None: PMID:23778966 (2013): AT2G40630.1:None: PMID:23778966 (2013): AT5G51230.1:None: PMID:23778966 (2013): AT3G05380.1:None: PMID:23778966 (2013): AT4G02020.1:None: PMID:23778966 (2013): AT3G06720.1:None: PMID:23778966 (2013): AT4G20300.1:None: PMID:23778966 (2013): AT3G20050.1:None: PMID:23778966 (2013): AT5G17690.1:None: PMID:23778966 (2013): AT3G03960.1:None: PMID:18854416 (2008): AT4G02020.1:None:

SUBAcon links
AGI-AGI relationships

Coexpression

PPI

AT5G67380.1 endoplasmic reticulum [5.52]
AT3G26890.1 nucleus [5.1]
AT3G62980.1 nucleus [4.9]
AT5G23340.1 nucleus [4.86]
AT5G20520.1 endoplasmic reticulum [4.84]
AT2G03270.1 nucleus [4.84]
AT1G72410.1 nucleus [4.82]
AT2G23070.1 cytosol [4.78]
AT4G12570.1 nucleus [4.78]
AT1G05840.1 plasma membrane [4.71]

AT2G41840.1 cytosol
AT3G03960.1 cytosol
AT4G27090.1 cytosol
AT3G20050.1 cytosol
AT3G20740.1 nucleus
AT5G51230.1 nucleus
AT5G17690.1 nucleus
AT5G15020.1 nucleus
AT5G08450.1 nucleus
AT4G38130.1 nucleus
AT4G29000.1 nucleus
AT4G20300.1 nucleus
AT4G16845.1 nucleus
AT4G16143.1 nucleus
AT4G02020.1 nucleus
AT3G24440.1 nucleus
AT3G06720.1 nucleus
AT3G05380.1 nucleus
AT2G45250.1 nucleus
AT2G40630.1 nucleus
AT2G32840.1 nucleus
AT1G70060.1 nucleus
AT1G24190.1 nucleus
AT1G10450.1 nucleus
AT1G05190.1 plastid

Description (TAIR10)

protein_coding : vernalization5/VIN3-like

Curator
Summary (TAIR10)

Encodes a protein with similarity to VRN5 and VIN3.Contains both a fibronectin III and PHD finger domain. VEL1 is a part of a polycomb repressive complex (PRC2) that is involved in epigenetic silencing of the FLC flowering locus.

Computational
Description (TAIR10)

vernalization5/VIN3-like (VEL1); CONTAINS InterPro DOMAIN/s: Protein of unknown function DUF1423, plant (InterPro:IPR004082), Fibronectin, type III-like fold (InterPro:IPR008957), Fibronectin, type III (InterPro:IPR003961); BEST Arabidopsis thaliana protein match is: Fibronectin type III domain-containing protein (TAIR:AT5G57380.1); Has 270 Blast hits to 250 proteins in 39 species: Archae - 0; Bacteria - 2; Metazoa - 8; Fungi - 14; Plants - 239; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink).

Protein Annotations

EnsemblPlants:AT4G30200	EnsemblPlants:AT4G30200.1	entrez:829143	hmmpanther:PTHR21736
hmmpanther:PTHR21736:SF13	Pfam:PF07227	Pfscan:PS50853	tair10-symbols:VEL1
tair10-symbols:VIL2

Coordinates (TAIR10)

chr4:-:14786852..14789103

Molecular Weight (calculated)

75849.90 Da

IEP (calculated)

6.88

GRAVY (calculated)

-0.44

Length

685 amino acids

Sequence (TAIR10)
(BLAST)

001: MSVDEKRQLV YELSKQSHLA AEVLQAWSRQ EILQILCAEM GKERKYTGLT KVKIIETLLK IVSEKNSGEC EGKKRDSDCL PIQRNTKRQR KVDNPSRYVI
101: PATNIVTSNN ASGSCSSVNT KGESTTIYCK NLACRAVLRQ EDSFCRRCSC CICRKYDDNK DPSLWLTCSS DPPFEGESCG FSCHLECAFN TEKSGLGKDK
201: QSEGCCFYCV SCGKANSLLE CWKKQLTIAK ETRRVEVLCY RLFLVQKLLK SSTKYRNLCE VVDEAVKTLE ADVGPLTGLP MKMGRGIVNR LHSGPDVQKL
301: CSSALESLET IATTPPDVAA LPSPRSSKMQ QDTATTGSTK IRFEDVNATS LTVVLASNEI PSPPNIVHYS IWHRKVPEKD YPEKSTCTLF IPNTRFVVSG
401: LAPASEYCFK VVSYSGTREM GVDEINVLTR SAEEGANCSS AVERSVSPLT NCSTLSSNPS SVEAESNNDY IVPKKPSSKN EDNNSPSVDE SAAKRMKRTT
501: DSDIVQIEKD VEQIVLLDDE EQEAVLDKTE SETPVVVTTK SLVGNRNSSD ASLPITPFRS DEIKNRQARI EISMKDNCNN GDHSANGGTE SGLEHCVKII
601: RQLECSGHID KNFRQKFLTW YSLRATSQEI RVVKIFIDTF IDDPMALAEQ LIDTFDDRVS IKRSAVGGSG ASAVVPSGFC MKLWH