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AT4G30170.1
Subcellular Consensus
(Prediction and Experimental)

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SUBAcon:
extracellular 1.000
What is SUBAcon?
What is ASURE?
SUBAcon computations
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:25900983 (2015): Golgi trans-Golgi network
  • PMID:25900983 (2015): Golgi trans-Golgi network multivesicular body
  • PMID:25900983 (2015): Golgi trans-Golgi network early endosome
  • PMID:24012629 (2013): nucleus
  • PMID:21109274 (2011): extracellular region
  • PMID:19334764 (2009): plasma membrane
  • PMID:16729891 (2006): extracellular region
  • PMID:16356755 (2006): extracellular region
  • PMID:15694452 (2005): extracellular region
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : Peroxidase family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Peroxidase family protein; FUNCTIONS IN: peroxidase activity, heme binding; INVOLVED IN: oxidation reduction, response to oxidative stress; LOCATED IN: endomembrane system; EXPRESSED IN: hypocotyl, root; CONTAINS InterPro DOMAIN/s: Haem peroxidase (InterPro:IPR010255), Plant peroxidase (InterPro:IPR000823), Peroxidases heam-ligand binding site (InterPro:IPR019793), Haem peroxidase, plant/fungal/bacterial (InterPro:IPR002016), Peroxidase, active site (InterPro:IPR019794); BEST Arabidopsis thaliana protein match is: Peroxidase superfamily protein (TAIR:AT2G18980.1); Has 4599 Blast hits to 4572 proteins in 303 species: Archae - 0; Bacteria - 4; Metazoa - 3; Fungi - 218; Plants - 4307; Viruses - 0; Other Eukaryotes - 67 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30170-MONOMEREC:1.11.1.7eggNOG:ENOG410IJYGeggNOG:ENOG4111S7REMBL:AF370284EMBL:AL109796EMBL:AL161576
EMBL:AY063051EMBL:AY085450EMBL:CP002687EMBL:X98855EnsemblPlants:AT4G30170EnsemblPlants:AT4G30170.1entrez:829140
GeneID:829140Genevisible:Q96522GO:GO:0004601GO:GO:0005576GO:GO:0006979GO:GO:0020037GO:GO:0042744
GO:GO:0046872Gramene:AT4G30170.1hmmpanther:PTHR31517hmmpanther:PTHR31517:SF10HOGENOM:HOG000237556InParanoid:Q96522InterPro:IPR000823
InterPro:IPR002016InterPro:IPR010255InterPro:IPR019793InterPro:IPR019794KEGG:00940+1.11.1.7KEGG:ath:AT4G30170KO:K00430
OMA:QLKQMCPPaxDb:Q96522PeroxiBase:211Pfam:PF00141Pfam:Q96522Pfscan:PS50873Pfscan:PS51257
PhylomeDB:Q96522PIR:T14077PRIDE:Q96522PRINTS:PR00458PRINTS:PR00461PRO:PR:Q96522PROSITE:PS00435
PROSITE:PS00436PROSITE:PS50873ProteinModelPortal:Q96522Proteomes:UP000006548RefSeq:NP_194746.1scanprosite:PS00435scanprosite:PS00436
SMR:Q96522STRING:3702.AT4G30170.1SUPFAM:SSF48113TAIR:AT4G30170UniGene:At.24710UniGene:At.67068UniProt:Q96522
Coordinates (TAIR10) chr4:+:14762922..14764482
Molecular Weight (calculated) 35830.80 Da
IEP (calculated) 9.37
GRAVY (calculated) -0.21
Length 325 amino acids
Sequence (TAIR10)
(BLAST)
001: MEKNTSQTIF SNFFLLLLLS SCVSAQLRTG FYQNSCPNVE TIVRNAVRQK FQQTFVTAPA TLRLFFHDCF VRGCDASIMI ASPSERDHPD DMSLAGDGFD
101: TVVKAKQAVD SNPNCRNKVS CADILALATR EVVVLTGGPS YPVELGRRDG RISTKASVQS QLPQPEFNLN QLNGMFSRHG LSQTDMIALS GAHTIGFAHC
201: GKMSKRIYNF SPTTRIDPSI NRGYVVQLKQ MCPIGVDVRI AINMDPTSPR TFDNAYFKNL QQGKGLFTSD QILFTDQRSR STVNSFANSE GAFRQAFITA
301: ITKLGRVGVL TGNAGEIRRD CSRVN
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)