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AT4G30160.1
Subcellular Consensus
(Prediction and Experimental)
min: heatmap :max

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SUBAcon:
cytosol 0.971
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
  • PMID:28865150 (2017): extracellular region plant-type cell wall
  • PMID:26781341 (2016): plasma membrane
  • PMID:26572690 (2016): extracellular region plant-type cell wall
  • PMID:23673981 (2013): plastid plastid stroma plastoglobules
  • PMID:21166475 (2011): cytosol
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no PPI data
Description (TAIR10) protein_coding : villin 4
Curator
Summary (TAIR10)
Arabidopsis thaliana VILLIN4
Computational
Description (TAIR10)
villin 4 (VLN4); FUNCTIONS IN: actin binding; INVOLVED IN: cytoskeleton organization; LOCATED IN: cellular_component unknown; EXPRESSED IN: 24 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Gelsolin (InterPro:IPR007122), Villin headpiece (InterPro:IPR003128), Gelsolin domain (InterPro:IPR007123); BEST Arabidopsis thaliana protein match is: villin, putative (TAIR:AT5G57320.1); Has 3425 Blast hits to 2326 proteins in 232 species: Archae - 0; Bacteria - 22; Metazoa - 2546; Fungi - 193; Plants - 266; Viruses - 0; Other Eukaryotes - 398 (source: NCBI BLink).
Protein Annotations
BioGrid:14426eggNOG:ENOG410XR0AeggNOG:KOG0443EMBL:AK117296
EMBL:AL078464EMBL:AL109796EMBL:AL161576EMBL:BT005980
EMBL:CP002687EMBL:Y12782EnsemblPlants:AT4G30160EnsemblPlants:AT4G30160.1
EnsemblPlants:AT4G30160.2entrez:829139ExpressionAtlas:O65570Gene3D:1.10.950.10
Gene3D:3.40.20.10GeneID:829139Genevisible:O65570GO:GO:0005737
GO:GO:0005856GO:GO:0051017GO:GO:0051693hmmpanther:PTHR11977
hmmpanther:PTHR11977:SF47HOGENOM:HOG000233631InParanoid:O65570InterPro:IPR003128
InterPro:IPR007122InterPro:IPR007123InterPro:IPR029006InterPro:IPR030009
iPTMnet:O65570KEGG:ath:AT4G30160OMA:TANDEDKPANTHER:PTHR11977
PANTHER:PTHR11977:SF47PaxDb:O65570Pfam:O65570Pfam:PF00626
Pfam:PF02209Pfscan:PS51089PhylomeDB:O65570PIR:T14076
PRIDE:O65570PRINTS:PR00597PRO:PR:O65570PROSITE:PS51089
ProteinModelPortal:O65570Proteomes:UP000006548RefSeq:NP_001190869.1RefSeq:NP_194745.1
SMART:SM00153SMART:SM00262SMR:O65570STRING:3702.AT4G30160.2
SUPFAM:SSF47050SUPFAM:SSF55753TAIR:AT4G30160tair10-symbols:ATVLN4
tair10-symbols:VLN4UniGene:At.64UniGene:At.67575UniProt:O65570
Coordinates (TAIR10) chr4:+:14754528..14759511
Molecular Weight (calculated) 109333.00 Da
IEP (calculated) 5.99
GRAVY (calculated) -0.55
Length 974 amino acids
Sequence (TAIR10)
(BLAST)
001: MSVSMRDLDP AFQGAGQKAG IEIWRIENFI PTPIPKSSIG KFFTGDSYIV LKTTALKTGA LRHDIHYWLG KDTSQDEAGT AAVKTVELDA ALGGRAVQYR
101: EVQGHETEKF LSYFKPCIIP QEGGVASGFK HVVAEEHITR LFVCRGKHVV HVKEVPFARS SLNHDDIYIL DTKSKIFQFN GSNSSIQERA KALEVVQYIK
201: DTYHDGTCEV ATVEDGKLMA DADSGEFWGF FGGFAPLPRK TANDEDKTYN SDITRLFCVE KGQANPVEGD TLKREMLDTN KCYILDCGIE VFVWMGRTTS
301: LDDRKIASKA AEEMIRSSER PKSQMIRIIE GFETVPFRSK FESWTQETNT TVSEDGRGRV AALLQRQGVN VRGLMKAAPP KEEPQVFIDC TGNLQVWRVN
401: GQAKTLLQAA DHSKFYSGDC YVFQYSYPGE EKEEVLIGTW FGKQSVEEER GSAVSMASKM VESMKFVPAQ ARIYEGKEPI QFFVIMQSFI VFKGGISSGY
501: KKYIAEKEVD DDTYNENGVA LFRIQGSGPE NMQAIQVDPV AASLNSSYYY ILHNDSSVFT WAGNLSTATD QELAERQLDL IKPNQQSRAQ KEGSESEQFW
601: ELLGGKAEYS SQKLTKEPER DPHLFSCTFT KEVLKVTEIY NFTQDDLMTE DIFIIDCHSE IFVWVGQEVV PKNKLLALTI GEKFIEKDSL LEKLSPEAPI
701: YVIMEGGEPS FFTRFFTSWD SSKSAMHGNS FQRKLKIVKN GGTPVADKPK RRTPASYGGR ASVPDKSQQR SRSMSFSPDR VRVRGRSPAF NALAATFESQ
801: NARNLSTPPP VVRKLYPRSV TPDSSKFAPA PKSSAIASRS ALFEKIPPQE PSIPKPVKAS PKTPESPAPE SNSKEQEEKK ENDKEEGSMS SRIESLTIQE
901: DAKEGVEDEE DLPAHPYDRL KTTSTDPVSD IDVTRREAYL SSEEFKEKFG MTKEAFYKLP KWKQNKFKMA VQLF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)