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AT4G30070.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 1.000
ASURE: extracellular
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : low-molecular-weight cysteine-rich 59
Curator
Summary (TAIR10)
Encodes a member of a family of small,secreted, cysteine rich protein with sequence similarity to the PCP (pollen coat protein) gene family. Predicted to encode a PR (pathogenesis-related) protein. Belongs to the plant defensin (PDF) family with the following members: At1g75830/PDF1.1, At5g44420/PDF1.2a, At2g26020/PDF1.2b, At5g44430/PDF1.2c, At2g26010/PDF1.3, At1g19610/PDF1.4, At1g55010/PDF1.5, At2g02120/PDF2.1, At2g02100/PDF2.2, At2g02130/PDF2.3, At1g61070/PDF2.4, At5g63660/PDF2.5, At2g02140/PDF2.6, At5g38330/PDF3.1 and At4g30070/PDF3.2.
Computational
Description (TAIR10)
low-molecular-weight cysteine-rich 59 (LCR59); INVOLVED IN: defense response; LOCATED IN: endomembrane system; EXPRESSED IN: central cell, embryo; EXPRESSED DURING: C globular stage; BEST Arabidopsis thaliana protein match is: low-molecular-weight cysteine-rich 58 (TAIR:AT5G38317.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink).
Protein Annotations
EMBL:AL078464EMBL:AL161576EMBL:AY803271EMBL:CP002687
EMBL:DQ446884EMBL:DQ653236EnsemblPlants:AT4G30070EnsemblPlants:AT4G30070.1
entrez:829130GeneID:829130Genevisible:P82773GO:GO:0005576
GO:GO:0006952GO:GO:0031640GO:GO:0050832Gramene:AT4G30070.1
hmmpanther:PTHR36788hmmpanther:PTHR36788:SF1HOGENOM:HOG000091148InParanoid:P82773
KEGG:ath:AT4G30070OMA:NCDERCKPaxDb:P82773Pfam:P82773
PhylomeDB:P82773PRO:PR:P82773ProteinModelPortal:P82773Proteomes:UP000006548
RefSeq:NP_567840.1STRING:3702.AT4G30070.1TAIR:AT4G30070tair10-symbols:LCR59
TMHMM:TMhelixUniGene:At.31862UniProt:P82773
Coordinates (TAIR10) chr4:+:14697549..14698315
Molecular Weight (calculated) 13863.50 Da
IEP (calculated) 5.65
GRAVY (calculated) -0.15
Length 129 amino acids
Sequence (TAIR10)
(BLAST)
001: METVTSLVFI VNLLIIFTSV VNQARGDTCI DGLGYCNNCD ERCKAKHGPS SESSCDRSVG VPLCKCYYEC ESPPSPPAPP KKCDGGAGIC SQRCQGQCCD
101: MNCAQKYIGG HGFCNTLGTF SFCQCEYPC
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)