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AT4G30040.1
Subcellular Consensus
(Prediction and Experimental)
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SUBAcon:
extracellular 0.995
What is SUBAcon?
Experimental Localisations and PPI
FP MS/MS PPI
SUBAcon links
AGI-AGI relationships
Coexpression PPI
no coexpression data no PPI data
Description (TAIR10) protein_coding : Eukaryotic aspartyl protease family protein
Curator
Summary (TAIR10)
Computational
Description (TAIR10)
Eukaryotic aspartyl protease family protein; FUNCTIONS IN: aspartic-type endopeptidase activity; INVOLVED IN: proteolysis; LOCATED IN: endomembrane system; EXPRESSED IN: sepal, flower; EXPRESSED DURING: petal differentiation and expansion stage; CONTAINS InterPro DOMAIN/s: Peptidase aspartic (InterPro:IPR021109), Peptidase aspartic, catalytic (InterPro:IPR009007), Peptidase A1 (InterPro:IPR001461); BEST Arabidopsis thaliana protein match is: Eukaryotic aspartyl protease family protein (TAIR:AT4G30030.1); Has 1813 Blast hits to 1802 proteins in 111 species: Archae - 0; Bacteria - 0; Metazoa - 8; Fungi - 90; Plants - 1687; Viruses - 0; Other Eukaryotes - 28 (source: NCBI BLink).
Protein Annotations
BioCyc:ARA:AT4G30040-MONOMEReggNOG:ENOG410XNV7eggNOG:KOG1339EMBL:AL078464
EMBL:AL161576EMBL:CP002687EMBL:DQ056665EnsemblPlants:AT4G30040
EnsemblPlants:AT4G30040.1entrez:829127Gene3D:2.40.70.10GeneID:829127
GO:GO:0004190Gramene:AT4G30040.1hmmpanther:PTHR13683hmmpanther:PTHR13683:SF335
HOGENOM:HOG000237482InterPro:IPR001461InterPro:IPR021109InterPro:IPR032799
InterPro:IPR032861InterPro:IPR033121KEGG:ath:AT4G30040MEROPS:A01.A52
OMA:CINCYAQPANTHER:PTHR13683Pfam:PF14541Pfam:PF14543
Pfscan:PS51767PhylomeDB:Q9SZV7PIR:T08980PRINTS:PR00792
PROSITE:PS51767Proteomes:UP000006548RefSeq:NP_194733.1STRING:3702.AT4G30040.1
SUPFAM:SSF50630TAIR:AT4G30040TMHMM:TMhelixUniGene:At.54554
UniProt:Q9SZV7
Coordinates (TAIR10) chr4:+:14685602..14686885
Molecular Weight (calculated) 47360.50 Da
IEP (calculated) 4.98
GRAVY (calculated) 0.06
Length 427 amino acids
Sequence (TAIR10)
(BLAST)
001: MAIFFTSPLF FLIILCFSIS VVHLSASPTL VLNLVHSYHI YSRKPPHVYH IKEASVERLE YLKAKTTGDI IAHLSPNVPI IPQAFLVNIS IGSPPITQLL
101: HMDTASDLLW IQCLPCINCY AQSLPIFDPS RSYTHRNETC RTSQYSMPSL KFNANTRSCE YSMRYVDDTG SKGILAREML LFNTIYDESS SAALHDVVFG
201: CGHDNYGEPL VGTGILGLGY GEFSLVHRFG KKFSYCFGSL DDPSYPHNVL VLGDDGANIL GDTTPLEIHN GFYYVTIEAI SVDGIILPID PRVFNRNHQT
301: GLGGTIIDTG NSLTSLVEEA YKPLKNRIED IFEGRFTAAD VSQDDMIKME CYNGNFERDL VESGFPIVTF HFSEGAELSL DVKSLFMKLS PNVFCLAVTP
401: GNLNSIGATA QQSYNIGYDL EAMEVSF
See Also
Citation
If you find this resource useful please cite one of the following publications:

Hooper CM, Castleden I, Tanz SK, Aryamanesh, and Millar, AH (2017) SUBA4: the interactive data analysis centre for Arabidopsis subcellular protein locations Nucleic Acids Res. Jan 4;45(D1):D1064-D1074. doi: 10.1093/nar/gkw1041 (PubMed)

Hooper CM, Tanz SK, Castleden IR, Vacher MA, Small ID, Millar AH (2014) "SUBAcon: a consensus algorithm for unifying the subcellular localization data of the Arabidopsis proteome. Bioinformatics." 1;30(23):3356-64. (Bioinformatics) (PubMed)